RetrogeneDB ID: | retro_cpor_887 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_31:23776513..23776924(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCPOG00000006543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.93 % |
Parental protein coverage: | 74.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
.Q.IKCV.VGDGAV...CLL...TTNKFPS.Y...VFDNY.VTVM.GG.PYTL.LFDT...E.Y.R..PL | |
Retrocopy | VQAIKCVAVGDGAV---CLLVFCTTNKFPSDY---VFDNYTVTVMVGGKPYTLRLFDTSETEKYYR**PL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYP.TD..L.C.SVVSPSSFENVKEK.VPE.T.HCPK..FLLVG.QIDL...PS.IEKLA.NKQKPIT.. | |
Retrocopy | SYPPTDICLICLSVVSPSSFENVKEK*VPEKTNHCPKSRFLLVGNQIDLKNNPSIIEKLARNKQKPITLV |
Parental | TAE |
TA. | |
Retrocopy | TAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 70 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 83 .54 RPM |
SRP017611_liver | 0 .00 RPM | 48 .58 RPM |
SRP040447_lung | 0 .00 RPM | 114 .91 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 60 .05 RPM |