RetrogeneDB ID: | retro_cpor_389 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_14:31959552..31959926(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSCPOG00000008479 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.46 % |
Parental protein coverage: | 50.6 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | LTAAWGRQIRNLHKTAVQNGAGGALFVHRDTPENNPDTPFDFTPEN-YKRIEAIIKNYPEGHKAAAVLP- |
LT...GR.IRNLHKTA.QNGA...LFVHRDTPENNPDTPFDFTPEN..KR.EAII.NYPE..KAAAVLP. | |
Retrocopy | LTSW*GR*IRNLHKTAMQNGATEVLFVHRDTPENNPDTPFDFTPEN<QKRTEAIINNYPERNKAAAVLP< |
Parental | VLDLAQRQNGWLPISAMNKVAEV-LQVPPMRVYEVATFYTMYNR-KPVGKYHIQVCTTTP |
.LDLAQRQNG.LPISA.NKV.EV.L.VPP.RVYEVATFYTM....KPVGK.HIQVCTT.P | |
Retrocopy | RLDLAQRQNG*LPISALNKVTEV<L*VPPVRVYEVATFYTMLTQ<KPVGKQHIQVCTTMP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 128 .14 RPM |
SRP017611_liver | 0 .00 RPM | 57 .67 RPM |
SRP040447_lung | 0 .00 RPM | 50 .42 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 193 .75 RPM |