RetrogeneDB ID: | retro_rnor_2993 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:146037602..146038004(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufv2 | ||
Ensembl ID: | ENSRNOG00000042503 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P19234] |
Percent Identity: | 76.43 % |
Parental protein coverage: | 55.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PENNPDTPFDFTPENYERIEAIVR-NYPEGHRAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVY |
P.NNP.TPFDFT.ENY...EAIV..NYPE.HRAAAVLPVLDLAQ.QNGWLPIS.MNKVAEVL.VPPMRVY | |
Retrocopy | PGNNPNTPFDFTQENY-KTEAIVK>NYPEVHRAAAVLPVLDLAQMQNGWLPISPMNKVAEVL*VPPMRVY |
Parental | EVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKLGIK-VGETTPDKLFTLIEVECLGACVN |
EVATF...Y.....G.YH.QVCT.TPCML..S.SILETLQRKLGIK.VGETTPDKLFTL.EV..L..C.N | |
Retrocopy | EVATF---YTMCINGMYHNQVCTATPCMLSNSHSILETLQRKLGIK<VGETTPDKLFTLTEVRGLCKCTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 64 .85 RPM |
SRP017611_kidney | 0 .00 RPM | 122 .19 RPM |
SRP017611_liver | 0 .00 RPM | 52 .11 RPM |