RetrogeneDB ID: | retro_ocun_1083 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:8514837..8515541(-) | ||
Located in intron of: | ENSOCUG00000006802 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSOCUG00000009899 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] |
Percent Identity: | 89.5 % |
Parental protein coverage: | 94.38 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | TAQWGKHLRNLHKT-AVQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVL |
.AQ.GKH.RNLHKT..VQNGAGGALFVHRDT.ENNPDTPFDFTPENYKRIE..VKNYPEGHKAAAVLPVL | |
Retrocopy | SAQ*GKHIRNLHKT<SVQNGAGGALFVHRDTSENNPDTPFDFTPENYKRIEVTVKNYPEGHKAAAVLPVL |
Parental | DLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQ |
DLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYN.KPVGKYHIQVCTTTPCML.NS.SILEAIQ | |
Retrocopy | DLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYN*KPVGKYHIQVCTTTPCML*NSGSILEAIQ |
Parental | K-KLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEE-IIDELKAGKIPKPGPRSG |
K.KLGIKVGETTPD.L.TL.EVECLGACVNAPMVQIND.Y.EDLTPKDIEE..IDELKAG.I.K.GPRSG | |
Retrocopy | K<KLGIKVGETTPDRLLTLVEVECLGACVNAPMVQINDSY*EDLTPKDIEE>TIDELKAGRILKAGPRSG |
Parental | RFSCEPAGGLTSLTEPPKGPGFGVQAGL |
R.SCEPAG.LT.LTEPPKGPGFGVQAGL | |
Retrocopy | RSSCEPAGDLTCLTEPPKGPGFGVQAGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 87 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 97 .00 RPM |
SRP017611_liver | 0 .00 RPM | 23 .12 RPM |