RetrogeneDB ID: | retro_sara_543 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_232278:77111..77708(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000014331 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSSARG00000011876 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] |
Percent Identity: | 68.5 % |
Parental protein coverage: | 85.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GRHIRNFHKSAVQNGAGGALFVHRDTPENNADTPFDFTPENYKRIEAIVKNYPEGHK-AAALLPVLDLAQ |
G..IR.FHK.AVQNGAGGALF.HRD.PENNADT.FD..PENYKRIEAIVK.Y.EGHK.AA.L........ | |
Retrocopy | GKQIRKFHKTAVQNGAGGALFLHRDAPENNADTLFDLIPENYKRIEAIVKSYLEGHKVAAGLKSSPGFST |
Parental | RQNGWLPISAM-NKVAEVLQV---PPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQ |
...GW.P.S.M......V..V...PPMRVYE.A.F.TM...KPVGKYHIQVC.T.PCM...S.....A.Q | |
Retrocopy | DRTGW*PVSVMLQRLYKVAEVLQVPPMRVYEIAMFNTMCY*KPVGKYHIQVCRTIPCMVPKS-ILVAAGQ |
Parental | KKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEE-IDELKAGKV |
KKLGIK.GETTPDKLFTL.EVECLG.CVNAPM.Q.ND.YYEDLTPKDIEE.IDE.KAGKV | |
Retrocopy | KKLGIKAGETTPDKLFTLSEVECLGVCVNAPMIQTNDKYYEDLTPKDIEEIIDEVKAGKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |