RetrogeneDB ID: | retro_tbel_468 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2144:398656..399278(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSTBEG00000015426 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] |
Percent Identity: | 80. % |
Parental protein coverage: | 89.27 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | RDTPENNPNTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPV-LDLAQRQNGWLPISAMNKVAEVLEVPPM |
.DT.ENNPNTPF.FTPEN.K.IE.IV.NYPEGHKAAA.L...LDLA.RQN..LPIS.MN.V.EVL.VPPM | |
Retrocopy | QDTAENNPNTPFNFTPENHKGIEMIV*NYPEGHKAAACLQA<LDLA*RQNERLPISPMNTVVEVLQVPPM |
Parental | RVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC |
RVY..AT..TM.NRKPVGKYHIQVCTTTPCMLRNSDS.LEAI.K.LGIKVGE.T.DKLFTLIEVECLGAC | |
Retrocopy | RVYQEATLSTMSNRKPVGKYHIQVCTTTPCMLRNSDSVLEAI*KMLGIKVGESTSDKLFTLIEVECLGAC |
Parental | VNAPMVQINDNYYEDLTPKDIEEIIDELKAGKMPKPGPRSGRFSCEPAGGLT-SLTEPPKGPGFGVQAGL |
.NAPMVQIND.YY.DLTPKDIEEI.DELKA.KMPKP.PRSG.FS..P.GG.T.SLTEP.KGP.FGVQAGL | |
Retrocopy | ANAPMVQINDTYYVDLTPKDIEEITDELKADKMPKPEPRSGGFSH*PTGGVT<SLTEPLKGPSFGVQAGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |