RetrogeneDB ID: | retro_hsap_2068 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:53727226..53727918(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000267809 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFV2 | ||
Ensembl ID: | ENSG00000178127 | ||
Aliases: | NDUFV2, CI-24k | ||
Description: | NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa [Source:HGNC Symbol;Acc:7717] |
Percent Identity: | 96.12 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GRHVRN-LHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ |
GRHVRN.LHKT.MQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ | |
Retrocopy | GRHVRN<LHKTAMQNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQ |
Parental | RQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLG |
RQNGWLPISAMNKVAEVLQVPP.RVYEVATFYTMYNRKPV.KYHIQVCTTTPCML.NSDSILEAIQKKLG | |
Retrocopy | RQNGWLPISAMNKVAEVLQVPPIRVYEVATFYTMYNRKPVEKYHIQVCTTTPCMLPNSDSILEAIQKKLG |
Parental | IKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEP |
IK.GETTPDKLFTL.EVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEP | |
Retrocopy | IKLGETTPDKLFTLVEVECLGACVNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEP |
Parental | AGGLTSLTEPPKGPGFGVQAGL |
AGGLT.LTEPPKGPGFG.QAGL | |
Retrocopy | AGGLTPLTEPPKGPGFGIQAGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 1 .05 RPM | 2 .03 RPM |
bodymap2_adrenal | 0 .37 RPM | 6 .08 RPM |
bodymap2_brain | 2 .67 RPM | 2 .60 RPM |
bodymap2_breast | 0 .27 RPM | 2 .80 RPM |
bodymap2_colon | 1 .33 RPM | 0 .46 RPM |
bodymap2_heart | 2 .57 RPM | 1 .03 RPM |
bodymap2_kidney | 0 .95 RPM | 0 .85 RPM |
bodymap2_liver | 0 .11 RPM | 1 .08 RPM |
bodymap2_lung | 2 .07 RPM | 2 .39 RPM |
bodymap2_lymph_node | 0 .82 RPM | 1 .44 RPM |
bodymap2_ovary | 0 .27 RPM | 1 .47 RPM |
bodymap2_prostate | 0 .55 RPM | 0 .74 RPM |
bodymap2_skeletal_muscle | 0 .24 RPM | 2 .11 RPM |
bodymap2_testis | 0 .79 RPM | 1 .68 RPM |
bodymap2_thyroid | 0 .53 RPM | 2 .67 RPM |
bodymap2_white_blood_cells | 0 .59 RPM | 0 .51 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .49 RPM |
CEU_NA11843 | 0 .51 RPM |
CEU_NA11930 | 1 .17 RPM |
CEU_NA12004 | 0 .38 RPM |
CEU_NA12400 | 0 .81 RPM |
CEU_NA12751 | 0 .66 RPM |
CEU_NA12760 | 0 .63 RPM |
CEU_NA12827 | 1 .04 RPM |
CEU_NA12872 | 1 .17 RPM |
CEU_NA12873 | 0 .35 RPM |
FIN_HG00183 | 0 .74 RPM |
FIN_HG00277 | 0 .22 RPM |
FIN_HG00315 | 0 .77 RPM |
FIN_HG00321 | 1 .00 RPM |
FIN_HG00328 | 0 .92 RPM |
FIN_HG00338 | 0 .62 RPM |
FIN_HG00349 | 0 .65 RPM |
FIN_HG00375 | 0 .37 RPM |
FIN_HG00377 | 0 .55 RPM |
FIN_HG00378 | 0 .62 RPM |
GBR_HG00099 | 0 .55 RPM |
GBR_HG00111 | 0 .80 RPM |
GBR_HG00114 | 0 .21 RPM |
GBR_HG00119 | 0 .43 RPM |
GBR_HG00131 | 0 .86 RPM |
GBR_HG00133 | 0 .75 RPM |
GBR_HG00134 | 0 .31 RPM |
GBR_HG00137 | 0 .27 RPM |
GBR_HG00142 | 0 .42 RPM |
GBR_HG00143 | 0 .29 RPM |
TSI_NA20512 | 0 .14 RPM |
TSI_NA20513 | 0 .51 RPM |
TSI_NA20518 | 0 .78 RPM |
TSI_NA20532 | 0 .41 RPM |
TSI_NA20538 | 0 .64 RPM |
TSI_NA20756 | 1 .37 RPM |
TSI_NA20765 | 0 .85 RPM |
TSI_NA20771 | 0 .71 RPM |
TSI_NA20786 | 0 .78 RPM |
TSI_NA20798 | 0 .44 RPM |
YRI_NA18870 | 0 .91 RPM |
YRI_NA18907 | 0 .42 RPM |
YRI_NA18916 | 0 .40 RPM |
YRI_NA19093 | 0 .10 RPM |
YRI_NA19099 | 1 .44 RPM |
YRI_NA19114 | 0 .31 RPM |
YRI_NA19118 | 0 .23 RPM |
YRI_NA19213 | 0 .57 RPM |
YRI_NA19214 | 0 .54 RPM |
YRI_NA19223 | 0 .32 RPM |