RetrogeneDB ID: | retro_rnor_784 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:20121265..20121538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2d3 | ||
Ensembl ID: | ENSRNOG00000013741 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 D3 [Source:RefSeq peptide;Acc:NP_112516] |
Percent Identity: | 73.63 % |
Parental protein coverage: | 61.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI |
.L..L.R.P...CSAG.VGDDMFHWQATIM..NDSPYQGG.FFLTIHFPTD.PFK.PK.AFTT..YH... | |
Retrocopy | KLTNLQRNPATWCSAGHVGDDMFHWQATIMVSNDSPYQGGIFFLTIHFPTD*PFKTPKDAFTTKTYHCHN |
Parental | NSNGSICLDILRSQWSPALTI |
.SNGSICLDILRS.WSP.LT. | |
Retrocopy | HSNGSICLDILRS*WSPELTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 133 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .77 RPM |
SRP017611_liver | 0 .00 RPM | 130 .51 RPM |