RetrogeneDB ID: | retro_rnor_345 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:83536249..83536693(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000029497 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2d3 | ||
Ensembl ID: | ENSRNOG00000013741 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 D3 [Source:RefSeq peptide;Acc:NP_112516] |
Percent Identity: | 83.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LALKRLHKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT |
.ALKR..KEL.DLARDPP.QCSAGPVG.DMFHWQATIMGP.DSPYQGGVFFL.IHFPTDYPFKPPK..FT | |
Retrocopy | MALKRIEKELLDLARDPPTQCSAGPVGEDMFHWQATIMGPDDSPYQGGVFFLAIHFPTDYPFKPPKITFT |
Parental | TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE |
TRIYHPNIN..GSICLDILRS.WSPALT.SKVLLSICSLLCDPNPDDPLVPEIA.IY..D..KY.R..RE | |
Retrocopy | TRIYHPNINRKGSICLDILRSEWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAKIYRKDKKKYDRLARE |
Parental | WTQKYAM |
WT.K.AM | |
Retrocopy | WTEKFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 133 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .77 RPM |
SRP017611_liver | 0 .00 RPM | 130 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4723 |
Pongo abelii | retro_pabe_30 |
Macaca mulatta | retro_mmul_2514 |