RetrogeneDB ID: | retro_dnov_2071 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_45609:11461..11749(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSDNOG00000018488 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 55.21 % |
Parental protein coverage: | 56.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GQFKDISLSDYKGKYIVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPXK |
G.F.D.SL.D.KGKY.V.FFYPLDFTFVC.TEI...S..A.EF...NC.V...SVD.HF.HLA.IN.P.K | |
Retrocopy | GEFEDLSLDDFKGKYLVLFFYPLDFTFVCTTEIXXXSNKANEFHDVNCEVVAFSVDYHFSHLA*INIPRK |
Parental | QGGLGPMNLSLVSDPKRTIAQDFGVL |
.G.L..MN..L..D....I.....VL | |
Retrocopy | NGVLSHMNIALLTDLTKQISLE*DVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 88 .09 RPM |
SRP012922_cerebellum | 0 .00 RPM | 21 .17 RPM |
SRP012922_heart | 0 .00 RPM | 49 .42 RPM |
SRP012922_kidney | 0 .00 RPM | 240 .39 RPM |
SRP012922_liver | 0 .31 RPM | 116 .57 RPM |
SRP012922_lung | 0 .00 RPM | 86 .44 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 74 .77 RPM |
SRP012922_spleen | 0 .00 RPM | 72 .11 RPM |