RetrogeneDB ID: | retro_dnov_272 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3196:52705..52927(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPG | ||
Ensembl ID: | ENSDNOG00000019446 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSKAHPPE-LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGM-VVIRGNSII |
MSK.H.P...KKFM.K.LSLK.NG.RHVQGIL.GF.PF.NLVIDECVEMATSGQQNN.GM.V.I.GNSII | |
Retrocopy | MSKVHTPK>RKKFMNKNLSLKSNGSRHVQGILQGFNPFLNLVIDECVEMATSGQQNNTGM<VAI*GNSII |
Parental | MLEALE |
MLEALE | |
Retrocopy | MLEALE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 37 .34 RPM |
SRP012922_cerebellum | 0 .00 RPM | 15 .67 RPM |
SRP012922_heart | 0 .00 RPM | 21 .81 RPM |
SRP012922_kidney | 0 .00 RPM | 22 .73 RPM |
SRP012922_liver | 0 .00 RPM | 15 .64 RPM |
SRP012922_lung | 0 .00 RPM | 30 .24 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 12 .29 RPM |
SRP012922_spleen | 0 .00 RPM | 37 .54 RPM |