RetrogeneDB ID: | retro_dnov_518 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5582:6891..7111(-) | ||
Located in intron of: | ENSDNOG00000009863 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPG | ||
Ensembl ID: | ENSDNOG00000019446 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVI-RGNSIIM |
.SKAHPPELK.F.DK.LSLKLNGGRHVQGIL.GFDPFMNLVIDECVEM.TSGQQNN.G.VVI.RGNS.IM | |
Retrocopy | VSKAHPPELKNFTDKNLSLKLNGGRHVQGILWGFDPFMNLVIDECVEMTTSGQQNNSGVVVI>RGNS-IM |
Parental | LEALE |
LEALE | |
Retrocopy | LEALE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .97 RPM | 37 .34 RPM |
SRP012922_cerebellum | 2 .75 RPM | 15 .67 RPM |
SRP012922_heart | 0 .00 RPM | 21 .81 RPM |
SRP012922_kidney | 0 .00 RPM | 22 .73 RPM |
SRP012922_liver | 0 .15 RPM | 15 .64 RPM |
SRP012922_lung | 0 .61 RPM | 30 .24 RPM |
SRP012922_quadricep_muscle | 1 .56 RPM | 12 .29 RPM |
SRP012922_spleen | 0 .69 RPM | 37 .54 RPM |