Parental gene:

RHOQ, ENSPPYG00000012439

Aliases:None
Description:ras homolog family member Q [Source:HGNC Symbol;Acc:17736]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:64780969..64815877(-)


>ENSPPYG00000012439
ATGGGGGTGAGCCCGGGGCCGGGGCGGGGGCTCCGGGGGGACCATGCCCGGAGGCCGGCCGGCAGCAGCATGGCTCACGG
GCCCGGCGCGCTGATGCTCAAGTGCGTGGTGGTCGGCGACGGGGCGGTGGGCAAGACGTGCCTACTCATGAGCTATGCCA
ACGACGCCTTCCCGGAGGAGTACGTGCCCACCGTCTTCGACCACTACGCAGTCAGCGTCACCGTGGGGGGCAAGCAGTAC
CTCCTAGGACTCTATGACACGGCCGGACAGGAAGACTATGACCGTCTGAGGCCTTTATCTTACCCAATGACCGATGTCTT
CCTTATATGCTTCTCGGTGGTAAATCCAGCCTCATTTCAAAATGTGAAAGAGGAGTGGGTACCGGAACTTAAGGAATACG
CACCAAATGTACCCTTTTTATTAATAGGAACTCAGATTGATCTCCGAGATGACCCCAAAACTTTAGCAAGACTGAATGAT
ATGAAAGAAAAACCTATATGTGTGGAACAAGGACAGAAACTAGCAAAAGAGATAGGAGCATGCTGCTATGTGGAATGTTC
AGCTTTAACCCAGAAGGGATTGAAGACTGTTTTTGATGAGGCTATCATAGCCATTTTAACTCCAAAGAAACACACTGTAA
AAAAAAGAATAGGATCAAGATGTATAAACTGTTGTTTAATTACGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 3 .54 RPM
SRP007412_cerebellum 1 .09 RPM
SRP007412_heart 25 .29 RPM
SRP007412_kidney 3 .55 RPM
SRP007412_liver 1 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000549 ortholog_one2one 3 retrogenes
retro_chof_2030, retro_chof_457, retro_chof_914,
Callithrix jacchus ENSCJAG00000000685 ortholog_one2one 1 retrogene
retro_cjac_2403,
Erinaceus europaeus ENSEEUG00000015226 ortholog_one2one 1 retrogene
retro_eeur_129,
Homo sapiens ENSG00000119729 ortholog_one2one 3 retrogenes
retro_hsap_1333, retro_hsap_2158, retro_hsap_2316,
Loxodonta africana ENSLAFG00000004327 ortholog_one2one 1 retrogene
retro_lafr_316,
Microcebus murinus ENSMICG00000009124 ortholog_one2one 1 retrogene
retro_mmur_29,
Otolemur garnettii ENSOGAG00000033272 ortholog_one2one 1 retrogene
retro_ogar_742,
Pongo abelii ENSPPYG00000001755 within_species_paralog 6 retrogenes
retro_pabe_2240, retro_pabe_2461, retro_pabe_2801, retro_pabe_3215, retro_pabe_3239, retro_pabe_3295,
Pongo abelii ENSPPYG00000008763 other_paralog 2 retrogenes
retro_pabe_1047, retro_pabe_2546,
Pongo abelii ENSPPYG00000011791 other_paralog 3 retrogenes
retro_pabe_1591, retro_pabe_21, retro_pabe_3818,
Pteropus vampyrus ENSPVAG00000013691 ortholog_one2one 1 retrogene
retro_pvam_611,
Rattus norvegicus ENSRNOG00000015415 ortholog_one2one 1 retrogene
retro_rnor_473,
Sus scrofa ENSSSCG00000008439 ortholog_one2one 1 retrogene
retro_sscr_102,
Tarsius syrichta ENSTSYG00000002837 ortholog_one2one 1 retrogene
retro_tsyr_1609,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1107 93.10 63.60
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2. retro_pabe_2195 93.33 92.11
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Download FASTA sequences of all ENSPPYG00000012439 retrocopies