Parental gene:

RHOQ, ENSCJAG00000000685

Aliases:None
Description:ras homolog family member Q [Source:HGNC Symbol;Acc:17736]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:61266069..61308743(-)


>ENSCJAG00000000685
ATGCCCGGAGCCGGCCGCAGCATGGCTCACGGGCCCGGCGCGCTGATGCTCAAGTGCGTGGTGGTCGGCGACGGGGCGGT
GGGCAAGACGTGCCTACTCATGAGCTATGCCAACGACGCCTTCCCGGAGGAGTACGTGCCCACCGTCTTCGACCACTACG
CAGTCAGCGTCACCGTGGGGGGCAAGCAGTACCTCCTCGGACTCTACGACACGGCCGGACAGGAAGACTATGACCGTCTG
AGGCCTTTATCTTACCCAATGACCGACGTCTTCCTTATATGCTTCTCGGTGGTAAATCCAGCCTCATTTCAAAATGTGAA
AGAGGAGTGGGTACCGGAACTTAAGGAATACGCACCAAATGTACCCTTTTTATTAATAGGAACTCAGATTGATCTCCGAG
ATGACCCCAAAACTTTAGCAAGACTGAATGATATGAAAGAAAAACCTATATGTGTGGAACAAGGACAGAAACTAGCAAAA
GAGATAGGAGCATGCTGCTATGTGGAATGTTCAGCTTTAACCCAGAAGGGATTGAAGACTGTTTTTGATGAGGCTATCAT
AGCCATTTTAACTCCAAAGAAACACACTGTAAAAAAAAGAATAGGATCAAGATGTATAAACTGTTGTTTAATTACATGA

Library Parental gene expression (RPM)
SRP051959_spleen 36 .85 RPM
SRP051959_skeletal_muscle 117 .73 RPM
SRP051959_lymph_node 18 .31 RPM
SRP051959_lung 30 .52 RPM
SRP051959_liver 9 .34 RPM
SRP051959_kidney 24 .36 RPM
SRP051959_heart 120 .75 RPM
SRP051959_colon 15 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000549 ortholog_one2one 3 retrogenes
retro_chof_2030, retro_chof_457, retro_chof_914,
Callithrix jacchus ENSCJAG00000002144 other_paralog 4 retrogenes
retro_cjac_1158, retro_cjac_1954, retro_cjac_2917, retro_cjac_847,
Callithrix jacchus ENSCJAG00000005912 within_species_paralog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Callithrix jacchus ENSCJAG00000018194 other_paralog 1 retrogene
retro_cjac_2687,
Erinaceus europaeus ENSEEUG00000015226 ortholog_one2one 1 retrogene
retro_eeur_129,
Homo sapiens ENSG00000119729 ortholog_one2one 3 retrogenes
retro_hsap_1333, retro_hsap_2158, retro_hsap_2316,
Loxodonta africana ENSLAFG00000004327 ortholog_one2one 1 retrogene
retro_lafr_316,
Microcebus murinus ENSMICG00000009124 ortholog_one2one 1 retrogene
retro_mmur_29,
Otolemur garnettii ENSOGAG00000033272 ortholog_one2one 1 retrogene
retro_ogar_742,
Pongo abelii ENSPPYG00000012439 ortholog_one2one 2 retrogenes
retro_pabe_1107, retro_pabe_2195,
Pteropus vampyrus ENSPVAG00000013691 ortholog_one2one 1 retrogene
retro_pvam_611,
Rattus norvegicus ENSRNOG00000015415 ortholog_one2one 1 retrogene
retro_rnor_473,
Sus scrofa ENSSSCG00000008439 ortholog_one2one 1 retrogene
retro_sscr_102,
Tarsius syrichta ENSTSYG00000002837 ortholog_one2one 1 retrogene
retro_tsyr_1609,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2403 96.67 98.58
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Download FASTA sequences of all ENSCJAG00000000685 retrocopies