RetrogeneDB ID: | retro_hsap_141 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:40428218..40429073(+) | ||
Located in intron of: | ENSG00000168389 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000228477 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSG00000140988 | ||
Aliases: | RPS2, LLREP3, S2 | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 91.58 % |
Parental protein coverage: | 97.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLV |
MADD.GAAGGPGGPGGPGMGN.G.FRGGFGSGIRGRG.GRGRG.GR..GA..GKAEDKEWMPVTKLGRLV | |
Retrocopy | MADDTGAAGGPGGPGGPGMGNSGAFRGGFGSGIRGRGHGRGRGPGRSCGAC*GKAEDKEWMPVTKLGRLV |
Parental | KDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLG |
KDMKIKSL.EIYLFSLPIK.SEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLG | |
Retrocopy | KDMKIKSLQEIYLFSLPIKGSEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLG |
Parental | VKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVP |
VKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKI.KPHTVPCKVTGRCGSVLVRLIPAPR.TGIVS.PVP | |
Retrocopy | VKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKISKPHTVPCKVTGRCGSVLVRLIPAPRSTGIVSTPVP |
Parental | KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRV |
KKLLMMAGIDDCYTSARGCTATLG.FAK.TFDAISKTYSYLTPDLWKETVFTKSP.QEFTDHL.KTH... | |
Retrocopy | KKLLMMAGIDDCYTSARGCTATLGSFAKGTFDAISKTYSYLTPDLWKETVFTKSPDQEFTDHLIKTHQAP |
Parental | SVQRT |
.V..T | |
Retrocopy | AVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 496 .47 RPM |
bodymap2_adrenal | 0 .14 RPM | 505 .10 RPM |
bodymap2_brain | 0 .12 RPM | 53 .79 RPM |
bodymap2_breast | 0 .00 RPM | 261 .89 RPM |
bodymap2_colon | 0 .06 RPM | 444 .16 RPM |
bodymap2_heart | 0 .00 RPM | 116 .21 RPM |
bodymap2_kidney | 0 .43 RPM | 179 .65 RPM |
bodymap2_liver | 0 .76 RPM | 249 .89 RPM |
bodymap2_lung | 1 .23 RPM | 464 .79 RPM |
bodymap2_lymph_node | 0 .51 RPM | 651 .42 RPM |
bodymap2_ovary | 0 .04 RPM | 445 .62 RPM |
bodymap2_prostate | 0 .83 RPM | 603 .00 RPM |
bodymap2_skeletal_muscle | 0 .04 RPM | 731 .68 RPM |
bodymap2_testis | 0 .13 RPM | 238 .89 RPM |
bodymap2_thyroid | 0 .21 RPM | 257 .52 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 782 .33 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .13 RPM |
CEU_NA11843 | 0 .54 RPM |
CEU_NA11930 | 0 .65 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .35 RPM |
CEU_NA12751 | 0 .78 RPM |
CEU_NA12760 | 0 .49 RPM |
CEU_NA12827 | 0 .24 RPM |
CEU_NA12872 | 0 .22 RPM |
CEU_NA12873 | 0 .57 RPM |
FIN_HG00183 | 0 .44 RPM |
FIN_HG00277 | 0 .22 RPM |
FIN_HG00315 | 0 .30 RPM |
FIN_HG00321 | 0 .18 RPM |
FIN_HG00328 | 0 .17 RPM |
FIN_HG00338 | 0 .09 RPM |
FIN_HG00349 | 0 .20 RPM |
FIN_HG00375 | 0 .39 RPM |
FIN_HG00377 | 0 .23 RPM |
FIN_HG00378 | 0 .06 RPM |
GBR_HG00099 | 0 .23 RPM |
GBR_HG00111 | 0 .19 RPM |
GBR_HG00114 | 0 .24 RPM |
GBR_HG00119 | 0 .36 RPM |
GBR_HG00131 | 0 .46 RPM |
GBR_HG00133 | 0 .46 RPM |
GBR_HG00134 | 0 .59 RPM |
GBR_HG00137 | 0 .27 RPM |
GBR_HG00142 | 0 .64 RPM |
GBR_HG00143 | 0 .32 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .94 RPM |
TSI_NA20518 | 0 .31 RPM |
TSI_NA20532 | 0 .75 RPM |
TSI_NA20538 | 0 .32 RPM |
TSI_NA20756 | 0 .09 RPM |
TSI_NA20765 | 0 .41 RPM |
TSI_NA20771 | 0 .17 RPM |
TSI_NA20786 | 0 .39 RPM |
TSI_NA20798 | 0 .41 RPM |
YRI_NA18870 | 0 .51 RPM |
YRI_NA18907 | 0 .24 RPM |
YRI_NA18916 | 0 .44 RPM |
YRI_NA19093 | 0 .42 RPM |
YRI_NA19099 | 0 .11 RPM |
YRI_NA19114 | 0 .26 RPM |
YRI_NA19118 | 0 .54 RPM |
YRI_NA19213 | 0 .55 RPM |
YRI_NA19214 | 0 .47 RPM |
YRI_NA19223 | 0 .40 RPM |