RetrogeneDB ID: | retro_hsap_1971 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:16523545..16524384(+) | ||
Located in intron of: | ENSG00000127527 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000240418 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSG00000140988 | ||
Aliases: | RPS2, LLREP3, S2 | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 85.05 % |
Parental protein coverage: | 94.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GPGMGNRGGFRGGFGSGIRGRGRGRG--RGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIYL |
GPGMGN...F.GGF.SGI.G.GRGRG..R.R..G.GA..GKAEDKEWMP.TKLGRLVKDMKIKSLEE.YL | |
Retrocopy | GPGMGNHSNFHGGFSSGIWGWGRGRGQHRSRDQGHGACRGKAEDKEWMPITKLGRLVKDMKIKSLEESYL |
Parental | FSLP-IKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIR |
FS.P.IKESEIIDF.LG.SLKDEVLKIMPVQKQTRAGQ.TRFKAFVAIGDYNGH.GLG.KCSKE.ATAIR | |
Retrocopy | FSRP<IKESEIIDFCLGGSLKDEVLKIMPVQKQTRAGQCTRFKAFVAIGDYNGHIGLGIKCSKEAATAIR |
Parental | GAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDC |
.AIILAKLSIVPV.RGYWGNKI.KPH.VPCKVTG.C.SVLV.LIP.PRGTGIVSAPV.KKLLMMA.I.DC | |
Retrocopy | RAIILAKLSIVPVCRGYWGNKISKPHIVPCKVTGHCNSVLV*LIPTPRGTGIVSAPVSKKLLMMASINDC |
Parental | YTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVAT |
YTSARGCTA.LGNF.KATFDAISKTYSYLTP.LWKETVFTKSPYQEFTDHLVKT.TRVS.Q.TQAPAVAT | |
Retrocopy | YTSARGCTAILGNFDKATFDAISKTYSYLTPNLWKETVFTKSPYQEFTDHLVKTYTRVSMQSTQAPAVAT |
Parental | T |
T | |
Retrocopy | T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 496 .47 RPM |
bodymap2_adrenal | 0 .23 RPM | 505 .10 RPM |
bodymap2_brain | 0 .00 RPM | 53 .79 RPM |
bodymap2_breast | 0 .00 RPM | 261 .89 RPM |
bodymap2_colon | 0 .04 RPM | 444 .16 RPM |
bodymap2_heart | 0 .04 RPM | 116 .21 RPM |
bodymap2_kidney | 0 .00 RPM | 179 .65 RPM |
bodymap2_liver | 0 .00 RPM | 249 .89 RPM |
bodymap2_lung | 0 .00 RPM | 464 .79 RPM |
bodymap2_lymph_node | 0 .04 RPM | 651 .42 RPM |
bodymap2_ovary | 0 .04 RPM | 445 .62 RPM |
bodymap2_prostate | 0 .00 RPM | 603 .00 RPM |
bodymap2_skeletal_muscle | 0 .04 RPM | 731 .68 RPM |
bodymap2_testis | 0 .06 RPM | 238 .89 RPM |
bodymap2_thyroid | 0 .00 RPM | 257 .52 RPM |
bodymap2_white_blood_cells | 0 .02 RPM | 782 .33 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .03 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .06 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .10 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .06 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .13 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .16 RPM |