RetrogeneDB ID: | retro_fcat_1606 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:89777744..89778505(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025551 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSFCAG00000029191 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 68.63 % |
Parental protein coverage: | 85.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGAS---LKDEVLKI |
G.G...G...G...DKEW....KL..LV..MKIK.L.E..L.SLPIKESEIIDFFL..S......EVLKI | |
Retrocopy | GLGQDHGTHRGNTKDKEWISINKLSQLVDIMKIKALKELSLSSLPIKESEIIDFFLDTSQEVMRFEVLKI |
Parental | MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHT |
MPVQKQT.AGQRTR.KAFVAIG...GHVGLGVK.SKEVATA...AI.L.K.......R.YWGN..G..HT | |
Retrocopy | MPVQKQTQAGQRTRCKAFVAIGEHKGHVGLGVKFSKEVATAFHEAIVLHKPFHRLMWRSYWGNQLGEAHT |
Parental | VPCKVTGRCGSVLV-RLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTY |
.PCK.T..C.SVL..RLIP..RG.GI.SAPVPK..LMMAGIDDCY.S.RG..ATLG.F.KATFDAI.KTY | |
Retrocopy | IPCKGTRHCDSVLD<RLIPYTRGRGILSAPVPKTILMMAGIDDCYLSTRGYAATLGHFTKATFDAIPKTY |
Parental | SYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
SY..PDLWKETVFTKSP.QEFTD.L.KTHTRVSVQ.TQAPAVATT | |
Retrocopy | SYRAPDLWKETVFTKSPRQEFTDQLAKTHTRVSVQKTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 283 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 608 .66 RPM |
SRP017611_liver | 0 .00 RPM | 446 .62 RPM |