RetrogeneDB ID: | retro_fcat_1737 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:11651250..11651904(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023619 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSFCAG00000029191 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 77.73 % |
Parental protein coverage: | 73.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ |
RGGKAEDKE.MP.TKLGRLV.D...KSLEEI.LFSLPIKESEI.DFFLG.SLKDEVLK.MPVQ.QTRAGQ | |
Retrocopy | RGGKAEDKESMPNTKLGRLVEDVNVKSLEEINLFSLPIKESEIVDFFLGVSLKDEVLKMMPVQNQTRAGQ |
Parental | RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGK-PHTVPCKVTGRCG |
.TR.K.F.AIGD.NGHVGLGVKCSKEVATAIRGA.ILAKLS..PVR.GYWG.KIGK.PH.VPCKVTG.CG | |
Retrocopy | LTRLKSFAAIGDDNGHVGLGVKCSKEVATAIRGAVILAKLSVFPVR*GYWGIKIGK>PHAVPCKVTGHCG |
Parental | SVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSAR-GCTA--TLGNFAKAT-FDAISKTYSYLTPDL |
SVLV.LIPAP.GTGI...PVP.KLLM.AGIDD..T.AR.GCTA....GNF.KAT.FD..SKTYS.LTPDL | |
Retrocopy | SVLVCLIPAPGGTGIA*TPVPEKLLMLAGIDDVCTAARGGCTAXXXXGNFTKAT<FDTVSKTYSSLTPDL |
Parental | WKETVFTKSP |
.KE.V...SP | |
Retrocopy | QKEAVHQVSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 283 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 608 .66 RPM |
SRP017611_liver | 0 .00 RPM | 446 .62 RPM |