RetrogeneDB ID: | retro_hsap_754 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:17249825..17250695(+) | ||
Located in intron of: | ENSG00000070081 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000197149 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSG00000140988 | ||
Aliases: | RPS2, LLREP3, S2 | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 93.1 % |
Parental protein coverage: | 98.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDM |
DAGA.GGPGGPGGPGMGNRGGFRGGFGSGIRG.G.GRG.G.G.GR.ARGGKAEDKEWMPVTKLGR.VKD. | |
Retrocopy | DAGAVGGPGGPGGPGMGNRGGFRGGFGSGIRGQGSGRGLGLGQGRRARGGKAEDKEWMPVTKLGRFVKDV |
Parental | KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC |
KIKSLEEIYLFSLPIKESEIIDFFL.ASLKDE.LKIMPVQKQTRAGQRTRFKAFVA.GDYNGHVGLGVKC | |
Retrocopy | KIKSLEEIYLFSLPIKESEIIDFFLAASLKDEILKIMPVQKQTRAGQRTRFKAFVAVGDYNGHVGLGVKC |
Parental | SKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL |
SK.VATAIRGAIILAKLSIVPVRRGYWGNKI.KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPK.L | |
Retrocopy | SKVVATAIRGAIILAKLSIVPVRRGYWGNKISKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKEL |
Parental | LMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQ |
LMMAGIDDCYTS.RGCTATLGNF.KATFDAISKTYSYLTPDLWKETVFTKS.YQEFTDHLVKTHTRVSVQ | |
Retrocopy | LMMAGIDDCYTSDRGCTATLGNFTKATFDAISKTYSYLTPDLWKETVFTKSTYQEFTDHLVKTHTRVSVQ |
Parental | RTQAPAVATT |
.TQA.AVATT | |
Retrocopy | WTQALAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .36 RPM | 496 .47 RPM |
bodymap2_adrenal | 2 .33 RPM | 505 .10 RPM |
bodymap2_brain | 0 .00 RPM | 53 .79 RPM |
bodymap2_breast | 0 .16 RPM | 261 .89 RPM |
bodymap2_colon | 0 .35 RPM | 444 .16 RPM |
bodymap2_heart | 2 .31 RPM | 116 .21 RPM |
bodymap2_kidney | 0 .08 RPM | 179 .65 RPM |
bodymap2_liver | 0 .49 RPM | 249 .89 RPM |
bodymap2_lung | 0 .70 RPM | 464 .79 RPM |
bodymap2_lymph_node | 1 .75 RPM | 651 .42 RPM |
bodymap2_ovary | 0 .21 RPM | 445 .62 RPM |
bodymap2_prostate | 3 .08 RPM | 603 .00 RPM |
bodymap2_skeletal_muscle | 1 .47 RPM | 731 .68 RPM |
bodymap2_testis | 0 .11 RPM | 238 .89 RPM |
bodymap2_thyroid | 0 .17 RPM | 257 .52 RPM |
bodymap2_white_blood_cells | 2 .97 RPM | 782 .33 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 13 .61 RPM |
CEU_NA11843 | 21 .50 RPM |
CEU_NA11930 | 13 .07 RPM |
CEU_NA12004 | 10 .90 RPM |
CEU_NA12400 | 7 .44 RPM |
CEU_NA12751 | 6 .00 RPM |
CEU_NA12760 | 13 .70 RPM |
CEU_NA12827 | 5 .57 RPM |
CEU_NA12872 | 5 .99 RPM |
CEU_NA12873 | 16 .75 RPM |
FIN_HG00183 | 12 .36 RPM |
FIN_HG00277 | 12 .94 RPM |
FIN_HG00315 | 3 .53 RPM |
FIN_HG00321 | 11 .70 RPM |
FIN_HG00328 | 4 .76 RPM |
FIN_HG00338 | 11 .11 RPM |
FIN_HG00349 | 7 .82 RPM |
FIN_HG00375 | 17 .48 RPM |
FIN_HG00377 | 10 .11 RPM |
FIN_HG00378 | 13 .26 RPM |
GBR_HG00099 | 6 .71 RPM |
GBR_HG00111 | 5 .82 RPM |
GBR_HG00114 | 13 .67 RPM |
GBR_HG00119 | 6 .68 RPM |
GBR_HG00131 | 7 .30 RPM |
GBR_HG00133 | 7 .09 RPM |
GBR_HG00134 | 9 .65 RPM |
GBR_HG00137 | 10 .20 RPM |
GBR_HG00142 | 7 .84 RPM |
GBR_HG00143 | 5 .87 RPM |
TSI_NA20512 | 12 .77 RPM |
TSI_NA20513 | 10 .20 RPM |
TSI_NA20518 | 12 .10 RPM |
TSI_NA20532 | 0 .24 RPM |
TSI_NA20538 | 11 .84 RPM |
TSI_NA20756 | 7 .33 RPM |
TSI_NA20765 | 6 .63 RPM |
TSI_NA20771 | 11 .60 RPM |
TSI_NA20786 | 12 .11 RPM |
TSI_NA20798 | 12 .41 RPM |
YRI_NA18870 | 12 .19 RPM |
YRI_NA18907 | 10 .68 RPM |
YRI_NA18916 | 9 .68 RPM |
YRI_NA19093 | 13 .90 RPM |
YRI_NA19099 | 8 .57 RPM |
YRI_NA19114 | 16 .33 RPM |
YRI_NA19118 | 15 .27 RPM |
YRI_NA19213 | 4 .33 RPM |
YRI_NA19214 | 10 .95 RPM |
YRI_NA19223 | 9 .61 RPM |