RetrogeneDB ID: | retro_fcat_1328 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:25903301..25903756(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSFCAG00000029191 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 83.01 % |
Parental protein coverage: | 51.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGA |
S.PIKESEIIDFFLGASLKDE.LKIMP.QKQT..GQ.TRFKAFVAI.DYN.HVGLG.KCSKEVA.AI.G. | |
Retrocopy | SIPIKESEIIDFFLGASLKDEILKIMPLQKQTHSGQWTRFKAFVAIRDYNRHVGLGAKCSKEVAAAIHGD |
Parental | IILAKLSIVPVRRGYWGNKIGKPHTVPCKVTG-RCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCY |
I.LAKLSI.PV.RGYWGNKIGK.HTVP.KVT...CGS.LVRLIPAPRGTGI.SAPVPKKLLMMAG.DDC. | |
Retrocopy | IVLAKLSIIPVQRGYWGNKIGKSHTVP*KVTA<PCGSMLVRLIPAPRGTGIISAPVPKKLLMMAGMDDCH |
Parental | TSARGCTATLGNF |
T.AR.CTATLGNF | |
Retrocopy | TLARACTATLGNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 283 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 608 .66 RPM |
SRP017611_liver | 0 .51 RPM | 446 .62 RPM |