Parental gene:

RPS2, ENSFCAG00000029191

Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]
Organism:Cat (Felis catus)
Coordinates:E3:41388882..41391257(+)


>ENSFCAG00000029191
CTGCAGACAGAGCATGGAGTCAGGAGTCAGAGGCCAGAGCCCGGGCGGCGGGGCCGGGGCGGCCGCGCTTGTCGGGGCCT
GGGTTTCACCTCCCCACACCGACGAGTGGGCGGCGGCCGGGGTCGAGGCCGGGGCCGCGGCCGCGGAGCTCGCGGAGGCA
AGGCCGAGGACAAGGAGTGGATGCCCGTCACCAAGCTGGGCCGCCTGGTCAAGGATATGAAGATCAAGTCCCTGGAGGAG
ATCTATCTCTTCTCTCTGCCCATCAAGGAGTCCGAGATCATTGACTTTTTCTTGGGGGCGTCACTCAAGGACGAGGTCTT
GAAGATTATGCCTGTGCAGAAACAGACCCGCGCTGGCCAGCGGACCAGGTTCAAGGCATTTGTTGCCATCGGAGACTACA
ACGGACACGTTGGTCTGGGTGTTAAGTGTTCTAAGGAGGTAGCCACCGCCATCCGTGGGGCCATCATCCTGGCCAAGCTT
TCCATCGTCCCCGTGCGGCGAGGCTACTGGGGGAACAAGATTGGGAAGCCCCACACTGTACCCTGCAAGGTGACAGGCCG
CTGTGGTTCTGTGCTGGTGCGCCTCATTCCTGCCCCCAGAGGCACTGGCATTGTCTCAGCCCCTGTACCTAAGAAGCTAC
TGATGATGGCTGGTATCGATGATTGCTACACCTCAGCTAGGGGCTGCACTGCCACCCTGGGCAACTTCGCCAAGGCCACT
TTTGATGCCATTTCTAAGACCTACAGCTATCTCACCCCTGATCTTTGGAAGGAGACTGTGTTCACCAAGTCTCCCTATCA
GGAATTCACTGACCATCTTGTAAAGACCCACACCAGAGTCTCTGTGCAGAGGACCCAGGCTCCAGCTGTGGCCACCACAT
AG

Library Parental gene expression (RPM)
SRP017611_liver 446 .62 RPM
SRP017611_kidney 608 .66 RPM
SRP017611_brain 283 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2many 1 retrogene
retro_acar_57,
Callithrix jacchus ENSCJAG00000015267 ortholog_one2many 15 retrogenes
retro_cjac_1482, retro_cjac_1585, retro_cjac_1609, retro_cjac_1712, retro_cjac_1964, retro_cjac_2201, retro_cjac_2255, retro_cjac_2284, retro_cjac_2361, retro_cjac_2493, retro_cjac_2620, retro_cjac_274, retro_cjac_317, retro_cjac_3741, retro_cjac_4194,
Homo sapiens ENSG00000140988 ortholog_one2one 47 retrogenes
retro_hsap_1060, retro_hsap_136, retro_hsap_140, retro_hsap_141, retro_hsap_1443, retro_hsap_1444, retro_hsap_1457, retro_hsap_1463, retro_hsap_148, retro_hsap_1648, retro_hsap_1688, retro_hsap_1722, retro_hsap_1812, retro_hsap_1830, retro_hsap_1831, retro_hsap_1838, retro_hsap_1845, retro_hsap_1897, retro_hsap_1953, retro_hsap_1965, retro_hsap_1971, retro_hsap_2124, retro_hsap_2198, retro_hsap_2424, retro_hsap_244, retro_hsap_2483, retro_hsap_2486, retro_hsap_250, retro_hsap_282, retro_hsap_2871, retro_hsap_3035, retro_hsap_3097, retro_hsap_3106, retro_hsap_3182, retro_hsap_3211, retro_hsap_3369, retro_hsap_3464, retro_hsap_3584, retro_hsap_3779, retro_hsap_385, retro_hsap_4094, retro_hsap_4290, retro_hsap_435, retro_hsap_4811, retro_hsap_754, retro_hsap_761, retro_hsap_970,
Gorilla gorilla ENSGGOG00000009371 ortholog_one2many 5 retrogenes
retro_ggor_129, retro_ggor_1391, retro_ggor_1428, retro_ggor_168, retro_ggor_390,
Macropus eugenii ENSMEUG00000004508 possible_ortholog 2 retrogenes
retro_meug_156, retro_meug_2103,
Microcebus murinus ENSMICG00000012765 possible_ortholog 28 retrogenes
retro_mmur_1192, retro_mmur_1273, retro_mmur_1283, retro_mmur_1296, retro_mmur_1407, retro_mmur_1417, retro_mmur_1440, retro_mmur_153, retro_mmur_1613, retro_mmur_205, retro_mmur_210, retro_mmur_226, retro_mmur_230, retro_mmur_259, retro_mmur_266, retro_mmur_463, retro_mmur_672, retro_mmur_698, retro_mmur_742, retro_mmur_802, retro_mmur_824, retro_mmur_829, retro_mmur_875, retro_mmur_953, retro_mmur_966, retro_mmur_969, retro_mmur_981, retro_mmur_99,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Otolemur garnettii ENSOGAG00000010098 ortholog_one2many 19 retrogenes
retro_ogar_1051, retro_ogar_1120, retro_ogar_1205, retro_ogar_1557, retro_ogar_1821, retro_ogar_1835, retro_ogar_1837, retro_ogar_1851, retro_ogar_2101, retro_ogar_2164, retro_ogar_2313, retro_ogar_2648, retro_ogar_2817, retro_ogar_2842, retro_ogar_2965, retro_ogar_3109, retro_ogar_3177, retro_ogar_3180, retro_ogar_794,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tupaia belangeri ENSTBEG00000006726 possible_ortholog 30 retrogenes
retro_tbel_1023, retro_tbel_1059, retro_tbel_1105, retro_tbel_1179, retro_tbel_129, retro_tbel_1444, retro_tbel_1545, retro_tbel_1615, retro_tbel_1622, retro_tbel_1786, retro_tbel_1910, retro_tbel_2294, retro_tbel_2749, retro_tbel_2786, retro_tbel_2973, retro_tbel_3179, retro_tbel_3314, retro_tbel_3509, retro_tbel_3523, retro_tbel_3682, retro_tbel_3701, retro_tbel_392, retro_tbel_4373, retro_tbel_463, retro_tbel_4674, retro_tbel_481, retro_tbel_586, retro_tbel_603, retro_tbel_639, retro_tbel_647,
Tarsius syrichta ENSTSYG00000013466 ortholog_one2one 52 retrogenes
retro_tsyr_1069, retro_tsyr_1078, retro_tsyr_1147, retro_tsyr_1301, retro_tsyr_131, retro_tsyr_1317, retro_tsyr_1466, retro_tsyr_1478, retro_tsyr_1498, retro_tsyr_1505, retro_tsyr_1509, retro_tsyr_1536, retro_tsyr_1564, retro_tsyr_1568, retro_tsyr_1588, retro_tsyr_1614, retro_tsyr_1636, retro_tsyr_1658, retro_tsyr_169, retro_tsyr_1789, retro_tsyr_1804, retro_tsyr_1827, retro_tsyr_186, retro_tsyr_1929, retro_tsyr_1935, retro_tsyr_2016, retro_tsyr_2175, retro_tsyr_290, retro_tsyr_349, retro_tsyr_415, retro_tsyr_417, retro_tsyr_463, retro_tsyr_472, retro_tsyr_525, retro_tsyr_527, retro_tsyr_545, retro_tsyr_568, retro_tsyr_604, retro_tsyr_605, retro_tsyr_609, retro_tsyr_61, retro_tsyr_622, retro_tsyr_638, retro_tsyr_650, retro_tsyr_672, retro_tsyr_689, retro_tsyr_691, retro_tsyr_699, retro_tsyr_768, retro_tsyr_773, retro_tsyr_922, retro_tsyr_980,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_517 66.23 50.17
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2. retro_fcat_1245 63.48 59.04
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3. retro_fcat_1328 83.01 51.88
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4. retro_fcat_1606 68.63 85.67
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5. retro_fcat_1610 66.00 66.89
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6. retro_fcat_1737 77.73 73.38
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Download FASTA sequences of all ENSFCAG00000029191 retrocopies