RetrogeneDB ID:

retro_ogar_1821

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873568.1:4328675..4329485(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027438
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS2
Ensembl ID:ENSOGAG00000010098
Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]


Retrocopy-Parental alignment summary:






>retro_ogar_1821
ATAGCAGATGACACTGATGCAGCAGGAGGGCCTGGAGGCCCCAGGGACCCTAGAATGGGAGGCAGTGGTGGTTTCCGTGG
AGGCTTTGGCAGTGGCATTTGGGGCTGGGGGCGCGGCCATGGTCGGGGTCAAGACCAAGGCCACGGAGCTCTCAGATGCA
AGGCCGAAGACAAAGAGTGGATGCCTGTCACCAAGCTGGGCCGCCTGATCAAGAACATGAAGATCAAATCTCTGGAGGAG
ATGTATCTTTTTTCCCTGCCCATCAAGGAATCTGAGATTATTGACTTTTTCCTGGAGGCATCACTCAAGGATGAGGTTTT
GAAGATTATGCCAGTGCAAAAGCAGACCTGCACTGGCCAGCGGACCAGGTTCAAGGCGTTTGTTGGCATTGGGGACTACA
GTGGCCATGTCGGTCTGTGTGTTAAGTATTCCAAGGAAGTAGCCACTGCCATCAGAGTGGCCATCATCCTGGCCAAGCTC
TCTATTGTCCCAGTGTGGAGAGGCTACTGGGGGAACAAGGTTGGCAAGCCTCACTCTGTTCCTTGTAAGGTGACAGGCTG
CTGTGGCTCTGTGCTGGTACGTCTCATTCCTGCTCCTAGAGGAACTGGCATTGTCTCAGCTCCTGTGCCTAAGAAGCTGC
TAATGATGGCTGGGATCGATGACTGCTACACCTCAGCCAGGGGCTGCACTGCCACCCTGGGCAACTTTGCCAAGGCCACT
TTTAATGCCATTTCCAAGACCTGTAGCTATCTCACGCCTGACCTCTGGAAAGAGACAGTGTTCACCAACTCTCCTTACCA
AGAATTCACT

ORF - retro_ogar_1821 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.04 %
Parental protein coverage: 92.15 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMADDAGAAGGPGGPGGPGMGGRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLV
.ADD..AAGGPGGP..P.MGG.GGFRGGFGSGI.G.GRG.GRG...G.GA...KAEDKEWMPVTKLGRL.
RetrocopyIADDTDAAGGPGGPRDPRMGGSGGFRGGFGSGIWGWGRGHGRGQDQGHGALRCKAEDKEWMPVTKLGRLI
ParentalKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLG
K.MKIKSLEE.YLFSLPIKESEIIDFFL.ASLKDEVLKIMPVQKQT..GQRTRFKAFV.IGDY.GHVGL.
RetrocopyKNMKIKSLEEMYLFSLPIKESEIIDFFLEASLKDEVLKIMPVQKQTCTGQRTRFKAFVGIGDYSGHVGLC
ParentalVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVP
VK.SKEVATAIR.AIILAKLSIVPV.RGYWGNK.GKPH.VPCKVTG.CGSVLVRLIPAPRGTGIVSAPVP
RetrocopyVKYSKEVATAIRVAIILAKLSIVPVWRGYWGNKVGKPHSVPCKVTGCCGSVLVRLIPAPRGTGIVSAPVP
ParentalKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFT
KKLLMMAGIDDCYTSARGCTATLGNFAKATF.AISKT.SYLTPDLWKETVFT.SPYQEFT
RetrocopyKKLLMMAGIDDCYTSARGCTATLGNFAKATFNAISKTCSYLTPDLWKETVFTNSPYQEFT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1821 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 139 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000025491 retrocopy
Felis catus ENSFCAG000000291916 retrocopies
Homo sapiens ENSG0000014098847 retrocopies
Macropus eugenii ENSMEUG000000045082 retrocopies
Microcebus murinus ENSMICG0000001276528 retrocopies
Monodelphis domestica ENSMODG000000160771 retrocopy
Otolemur garnettii ENSOGAG00000010098 19 retrocopies
Sarcophilus harrisii ENSSHAG000000152135 retrocopies
Tupaia belangeri ENSTBEG0000000672630 retrocopies



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