RetrogeneDB ID: | retro_hsap_970 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:15592460..15593335(+) | ||
Located in intron of: | ENSG00000151490 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000243916 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSG00000140988 | ||
Aliases: | RPS2, LLREP3, S2 | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 80.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGI-RGRGRGRGRGRGRGRGARGGKAEDKEWMPVTKLGRL |
.ADDAG.A.GPGG.GGPGMGN..GFRGGFGSGI..G.G...G...G.G.GA..GKAED.EWMPVT.L..L | |
Retrocopy | IADDAGGARGPGGLGGPGMGNHSGFRGGFGSGI<LGCGHSHGQSWG*GHGAH*GKAED-EWMPVTELDLL |
Parental | VKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGL |
VKDMKIKSLEEIYLFSLPIKES.IIDFFLGASLK...LKIM.VQKQT..GQ.T.FK.FVAIGDYNGH.GL | |
Retrocopy | VKDMKIKSLEEIYLFSLPIKESDIIDFFLGASLKNKDLKIMMVQKQTHVGQHTKFKVFVAIGDYNGHIGL |
Parental | GVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV |
GVKCSKEVATAI.GAIILAKLSIVPV.RGY.GNKI.KPHTVPCKVT.RC.SVLV.LIP..R..GI.SAPV | |
Retrocopy | GVKCSKEVATAICGAIILAKLSIVPVCRGYRGNKICKPHTVPCKVTDRCSSVLVHLIPESRNIGIISAPV |
Parental | PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTR |
PKKLLMMAGI.DCYT.ARGCTATLGNF.KATFDAISKTYSYLTP.L.KETVFT.SPYQEFT.H..KTHTR | |
Retrocopy | PKKLLMMAGINDCYTLARGCTATLGNFSKATFDAISKTYSYLTPNLRKETVFTMSPYQEFTEHFFKTHTR |
Parental | VSVQRTQAPAVATT |
VS.QRT.APAVATT | |
Retrocopy | VSMQRTEAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 496 .47 RPM |
bodymap2_adrenal | 0 .00 RPM | 505 .10 RPM |
bodymap2_brain | 0 .00 RPM | 53 .79 RPM |
bodymap2_breast | 0 .00 RPM | 261 .89 RPM |
bodymap2_colon | 0 .00 RPM | 444 .16 RPM |
bodymap2_heart | 0 .00 RPM | 116 .21 RPM |
bodymap2_kidney | 0 .00 RPM | 179 .65 RPM |
bodymap2_liver | 0 .00 RPM | 249 .89 RPM |
bodymap2_lung | 0 .00 RPM | 464 .79 RPM |
bodymap2_lymph_node | 0 .00 RPM | 651 .42 RPM |
bodymap2_ovary | 0 .00 RPM | 445 .62 RPM |
bodymap2_prostate | 0 .00 RPM | 603 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 731 .68 RPM |
bodymap2_testis | 0 .00 RPM | 238 .89 RPM |
bodymap2_thyroid | 0 .00 RPM | 257 .52 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 782 .33 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_23518 | 1195 libraries | 574 libraries | 59 libraries | 1 library | 0 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |