RetrogeneDB ID: | retro_hsap_2431 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 20:47751016..47751550(+) | ||
Located in intron of: | ENSG00000124214 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000226284 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSG00000111229 | ||
Aliases: | ARPC3, ARC21, p21-Arc | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 93.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIY |
MPA..SSLMDPDTKLIGN.ALLPIRSQFKGPAPRETKDTDIVDEA.YYFKANVFFKNYEIKNEADRTLIY | |
Retrocopy | MPAHYSSLMDPDTKLIGNIALLPIRSQFKGPAPRETKDTDIVDEANYYFKANVFFKNYEIKNEADRTLIY |
Parental | ITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQET |
.TLYISECLKKLQKCNSKSQGEKEMYTLGI..FPIPGEPGFPL.AIY.KPANKQEDEVMRAYLQQLRQET | |
Retrocopy | LTLYISECLKKLQKCNSKSQGEKEMYTLGIISFPIPGEPGFPLHAIYTKPANKQEDEVMRAYLQQLRQET |
Parental | GLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ |
GLRLCE.VFDP.NDKPS.WWTCFVKRQFMNKSLSGPGQ | |
Retrocopy | GLRLCEEVFDPKNDKPSTWWTCFVKRQFMNKSLSGPGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .16 RPM | 84 .30 RPM |
bodymap2_adrenal | 0 .43 RPM | 161 .73 RPM |
bodymap2_brain | 0 .09 RPM | 52 .06 RPM |
bodymap2_breast | 0 .12 RPM | 65 .31 RPM |
bodymap2_colon | 0 .15 RPM | 77 .56 RPM |
bodymap2_heart | 0 .13 RPM | 45 .84 RPM |
bodymap2_kidney | 0 .06 RPM | 118 .87 RPM |
bodymap2_liver | 0 .06 RPM | 78 .03 RPM |
bodymap2_lung | 0 .35 RPM | 150 .05 RPM |
bodymap2_lymph_node | 0 .18 RPM | 137 .18 RPM |
bodymap2_ovary | 0 .17 RPM | 62 .50 RPM |
bodymap2_prostate | 0 .00 RPM | 107 .37 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 36 .03 RPM |
bodymap2_testis | 0 .26 RPM | 84 .03 RPM |
bodymap2_thyroid | 0 .28 RPM | 80 .77 RPM |
bodymap2_white_blood_cells | 0 .32 RPM | 397 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1790 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008456 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009360 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006992 | 2 retrocopies | |
Felis catus | ENSFCAG00000004132 | 2 retrocopies | |
Homo sapiens | ENSG00000111229 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000005485 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000011628 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002151 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011908 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000003785 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014805 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000009821 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .24 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .39 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .11 RPM |
CEU_NA12751 | 0 .29 RPM |
CEU_NA12760 | 0 .13 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .16 RPM |
CEU_NA12873 | 0 .19 RPM |
FIN_HG00183 | 0 .16 RPM |
FIN_HG00277 | 0 .33 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .18 RPM |
FIN_HG00328 | 0 .17 RPM |
FIN_HG00338 | 0 .21 RPM |
FIN_HG00349 | 0 .20 RPM |
FIN_HG00375 | 0 .27 RPM |
FIN_HG00377 | 0 .13 RPM |
FIN_HG00378 | 0 .15 RPM |
GBR_HG00099 | 0 .26 RPM |
GBR_HG00111 | 0 .13 RPM |
GBR_HG00114 | 0 .21 RPM |
GBR_HG00119 | 0 .36 RPM |
GBR_HG00131 | 0 .11 RPM |
GBR_HG00133 | 0 .19 RPM |
GBR_HG00134 | 0 .15 RPM |
GBR_HG00137 | 0 .36 RPM |
GBR_HG00142 | 0 .28 RPM |
GBR_HG00143 | 0 .26 RPM |
TSI_NA20512 | 0 .20 RPM |
TSI_NA20513 | 0 .22 RPM |
TSI_NA20518 | 0 .28 RPM |
TSI_NA20532 | 0 .20 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .12 RPM |
TSI_NA20765 | 0 .23 RPM |
TSI_NA20771 | 0 .11 RPM |
TSI_NA20786 | 0 .18 RPM |
TSI_NA20798 | 0 .22 RPM |
YRI_NA18870 | 0 .20 RPM |
YRI_NA18907 | 0 .31 RPM |
YRI_NA18916 | 0 .19 RPM |
YRI_NA19093 | 0 .18 RPM |
YRI_NA19099 | 0 .19 RPM |
YRI_NA19114 | 0 .13 RPM |
YRI_NA19118 | 0 .23 RPM |
YRI_NA19213 | 0 .12 RPM |
YRI_NA19214 | 0 .27 RPM |
YRI_NA19223 | 0 .40 RPM |