RetrogeneDB ID: | retro_mmur_1507 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_71960:1024..1461(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSMICG00000005485 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 83.22 % |
Parental protein coverage: | 82.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | PRETKDTDIVDEAIYYFKANVFFKNYEIKNEAD-RTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGIT |
P.E....DIVDEA.YYFKANVFFKNYEIKNEA..RTLIY.TLY.SECLKKLQK.NSKSQG.KE.YTLGIT | |
Retrocopy | PQERPKIDIVDEALYYFKANVFFKNYEIKNEAI<RTLIYVTLYVSECLKKLQKLNSKSQGKKEIYTLGIT |
Parental | NFPIPGEPGFPLNAIYA-KPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQ-FM |
NFPIPGEP.FPL.AIYA.KPANKQED.VMR..LQQL.QETGL.LCEKVFDPQNDKPSKWWTCF.KRQ... | |
Retrocopy | NFPIPGEPSFPLDAIYA<KPANKQEDKVMRTCLQQLKQETGLSLCEKVFDPQNDKPSKWWTCFGKRQ>LL |
Parental | NKSLSGPGQ |
NKSLSGPGQ | |
Retrocopy | NKSLSGPGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008456 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009360 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006992 | 2 retrocopies | |
Felis catus | ENSFCAG00000004132 | 2 retrocopies | |
Homo sapiens | ENSG00000111229 | 5 retrocopies | |
Microcebus murinus | ENSMICG00000005485 | 2 retrocopies |
retro_mmur_1009, retro_mmur_1507 ,
|
Macaca mulatta | ENSMMUG00000006492 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011628 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002151 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011908 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000003785 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014805 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000009821 | 1 retrocopy |