RetrogeneDB ID:

retro_mdom_71

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:2:11420069..11420606(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMODG00000025281
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMODG00000011628
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mdom_71
ATGCCGGCATACCACTCCTCTCTCATGGACCCTGACACCAAACTAATTGGAAACATGGCACTATTACCCATTAGAAGTCA
ATTTAAAGGACCAGCTCCGAGAGAGACAAAAGACACAGATATTGTGGATGAAGCCATCTATTACTTCAAGGCCAATGTCT
TCTTCAAAAACTACGAAATTAAGAATGAAGCTGATAGAACGTTGATCTACATAACTCTTTACATTTCTGAATGCTTAAAG
AAACTCCAGAAGTGCAACTCAAAAAGCCAAGGAGAGAAAGAAATGTATACATTGGGAATCACTAATTTTCCTATCCCCGG
AGAACCAGGTTTCCCTCTTAATGCAATTTATGCCAGACCTGCAAATAAACAAGAAGATGAAGTGATGAGGGCCTACTTAC
AGCAGCTTCGACAAGAAACTGGGTTGAGGCTTTGTGAAAAGGTCTTTGATCCTCAGAGTGACAAACCTAGCAAGTGGTGG
ACTTGCTTTGTGAAGAGGCAGTTCATGAACAAGAGCCTTTCAGGGCCTGGCCAGTGA

ORF - retro_mdom_71 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.88 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLQAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIY
..AYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIY
RetrocopyMPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIY
ParentalITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYARPANKQEDEVMRAYLQQLRQET
ITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYARPANKQEDEVMRAYLQQLRQET
RetrocopyITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYARPANKQEDEVMRAYLQQLRQET
ParentalGLRLCEKVFDPQSDKPSKWWTCFVKRQFMNKSLSGPGQ
GLRLCEKVFDPQSDKPSKWWTCFVKRQFMNKSLSGPGQ
RetrocopyGLRLCEKVFDPQSDKPSKWWTCFVKRQFMNKSLSGPGQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_71 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_71 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000084561 retrocopy
Callithrix jacchus ENSCJAG000000093601 retrocopy
Dasypus novemcinctus ENSDNOG000000049872 retrocopies
Dipodomys ordii ENSDORG000000082121 retrocopy
Erinaceus europaeus ENSEEUG000000115312 retrocopies
Echinops telfairi ENSETEG000000069922 retrocopies
Felis catus ENSFCAG000000041322 retrocopies
Homo sapiens ENSG000001112295 retrocopies
Loxodonta africana ENSLAFG000000061663 retrocopies
Microcebus murinus ENSMICG000000054852 retrocopies
Macaca mulatta ENSMMUG000000064923 retrocopies
Monodelphis domestica ENSMODG00000011628 1 retrocopy
retro_mdom_71 ,
Mustela putorius furoENSMPUG000000021512 retrocopies
Nomascus leucogenys ENSNLEG000000028024 retrocopies
Oryctolagus cuniculus ENSOCUG000000119081 retrocopy
Otolemur garnettii ENSOGAG000000134241 retrocopy
Oreochromis niloticus ENSONIG000000037851 retrocopy
Procavia capensis ENSPCAG000000118582 retrocopies
Pongo abelii ENSPPYG000000049476 retrocopies
Sorex araneus ENSSARG000000005462 retrocopies
Sarcophilus harrisii ENSSHAG000000148053 retrocopies
Sus scrofa ENSSSCG000000098211 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000119791 retrocopy
Tupaia belangeri ENSTBEG000000112191 retrocopy
Tarsius syrichta ENSTSYG000000029534 retrocopies
Tursiops truncatus ENSTTRG000000150832 retrocopies
Vicugna pacos ENSVPAG000000084041 retrocopy



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