RetrogeneDB ID: | retro_pabe_1790 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:46839425..46839839(+) | ||
Located in intron of: | ENSPPYG00000011111 | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000011112 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSPPYG00000004947 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 94.2 % |
Parental protein coverage: | 82.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKS |
.LLPIRSQFKGPAPRETKDTD.VDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLK.LQKCNSKS | |
Retrocopy | SLLPIRSQFKGPAPRETKDTDTVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKELQKCNSKS |
Parental | QGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPS |
QGEKEMYTLGIT.FPIPGEPGFPLNAIY.KPANK.EDEVMRAYLQQLRQETGLRLCE.VFD.QNDKPS | |
Retrocopy | QGEKEMYTLGITSFPIPGEPGFPLNAIYTKPANKSEDEVMRAYLQQLRQETGLRLCEEVFDSQNDKPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 14 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .40 RPM |
SRP007412_heart | 0 .03 RPM | 6 .35 RPM |
SRP007412_kidney | 0 .07 RPM | 16 .81 RPM |
SRP007412_liver | 0 .09 RPM | 17 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2431 |