Parental gene:

ENSCJAG00000009360

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:100579108..100597282(-)


>ENSCJAG00000009360
ATGCCGGCTTACCACTCTTCTCTCATGGATCCTGACACCAAACTCATTGGAAACATGGCACTGTTACCTATCAGAAGTCA
ATTCAAAGGACCTGCCCCCAGAGAGACAAAAGATACAGATATTGTGGATGAAGCCATCTATTACTTCAAGGCCAATGTCT
TCTTCAAGAACTATGAAATTAAGAATGAAGCTGATAGGACCTTGATATATATAACTCTCTACATTTCTGAGTGTCTGAAG
AAACTCCAAAAGTGCAATTCCAAAAGCCAAGGTGAGAAAGAAATGTATACACTGGGAATCACTAATTTTCCCATTCCTGG
AGAGCCTGGTTTTCCACTTAATGCGATTTACGCCAAACCTGCAAACAAACAGGAAGATGAAGTGATGAGAGCCTATTTAC
AACAGCTAAGGCAAGAGACTGGACTGAGACTTTGTGAGAAAGTTTTCGACCCTCAGAATGATAAACCCAGCAAGTGGTGG
ACTTGCTTTGTGAAGAGACAGTTCATGAACAAGAGTCTTTCAGGACCTGGACAGTGA

Library Parental gene expression (RPM)
SRP051959_colon 28 .71 RPM
SRP051959_heart 17 .47 RPM
SRP051959_kidney 31 .04 RPM
SRP051959_liver 32 .12 RPM
SRP051959_lung 36 .94 RPM
SRP051959_lymph_node 48 .90 RPM
SRP051959_skeletal_muscle 24 .35 RPM
SRP051959_spleen 55 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008456 possible_ortholog 1 retrogene
retro_cfam_11,
Dasypus novemcinctus ENSDNOG00000004987 possible_ortholog 2 retrogenes
retro_dnov_2619, retro_dnov_685,
Dipodomys ordii ENSDORG00000008212 possible_ortholog 1 retrogene
retro_dord_312,
Erinaceus europaeus ENSEEUG00000011531 possible_ortholog 2 retrogenes
retro_eeur_122, retro_eeur_99,
Echinops telfairi ENSETEG00000006992 ortholog_one2many 2 retrogenes
retro_etel_116, retro_etel_1323,
Felis catus ENSFCAG00000004132 possible_ortholog 2 retrogenes
retro_fcat_1048, retro_fcat_73,
Homo sapiens ENSG00000111229 possible_ortholog 5 retrogenes
retro_hsap_2431, retro_hsap_303, retro_hsap_3425, retro_hsap_892, retro_hsap_918,
Loxodonta africana ENSLAFG00000006166 possible_ortholog 3 retrogenes
retro_lafr_1119, retro_lafr_763, retro_lafr_840,
Microcebus murinus ENSMICG00000005485 ortholog_one2many 2 retrogenes
retro_mmur_1009, retro_mmur_1507,
Macaca mulatta ENSMMUG00000006492 ortholog_one2many 3 retrogenes
retro_mmul_1105, retro_mmul_1174, retro_mmul_543,
Monodelphis domestica ENSMODG00000011628 ortholog_many2many 1 retrogene
retro_mdom_71,
Mustela putorius furo ENSMPUG00000002151 ortholog_one2many 2 retrogenes
retro_mputfur_1346, retro_mputfur_1540,
Nomascus leucogenys ENSNLEG00000002802 possible_ortholog 4 retrogenes
retro_nleu_239, retro_nleu_283, retro_nleu_3078, retro_nleu_389,
Oryctolagus cuniculus ENSOCUG00000011908 possible_ortholog 1 retrogene
retro_ocun_1252,
Otolemur garnettii ENSOGAG00000013424 possible_ortholog 1 retrogene
retro_ogar_2855,
Oreochromis niloticus ENSONIG00000003785 ortholog_many2many 1 retrogene
retro_onil_18,
Procavia capensis ENSPCAG00000011858 possible_ortholog 2 retrogenes
retro_pcap_421, retro_pcap_441,
Pongo abelii ENSPPYG00000004947 possible_ortholog 6 retrogenes
retro_pabe_1735, retro_pabe_1790, retro_pabe_2838, retro_pabe_376, retro_pabe_769, retro_pabe_792,
Sorex araneus ENSSARG00000000546 possible_ortholog 2 retrogenes
retro_sara_529, retro_sara_601,
Sarcophilus harrisii ENSSHAG00000014805 ortholog_one2many 3 retrogenes
retro_shar_144, retro_shar_439, retro_shar_576,
Sus scrofa ENSSSCG00000009821 ortholog_one2many 1 retrogene
retro_sscr_177,
Ictidomys tridecemlineatus ENSSTOG00000011979 possible_ortholog 1 retrogene
retro_itri_1350,
Tupaia belangeri ENSTBEG00000011219 possible_ortholog 1 retrogene
retro_tbel_2268,
Tarsius syrichta ENSTSYG00000002953 possible_ortholog 4 retrogenes
retro_tsyr_1150, retro_tsyr_1341, retro_tsyr_2103, retro_tsyr_794,
Tursiops truncatus ENSTTRG00000015083 possible_ortholog 2 retrogenes
retro_ttru_713, retro_ttru_880,
Vicugna pacos ENSVPAG00000008404 possible_ortholog 1 retrogene
retro_vpac_225,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_242 100.00 100.00
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Download FASTA sequences of all ENSCJAG00000009360 retrocopies