RetrogeneDB ID: | retro_fcat_73 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:4788042..4788579(+) | ||
Located in intron of: | ENSFCAG00000004693 | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000021943 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004132 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.86 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYIT |
AYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYIT | |
Retrocopy | AYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYIT |
Parental | LYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGL |
LYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVM.AYLQQLRQETGL | |
Retrocopy | LYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMGAYLQQLRQETGL |
Parental | RLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ |
RLCEKVF.PQNDKPSKWWTCFVKRQFMNKSLSGPGQ | |
Retrocopy | RLCEKVFGPQNDKPSKWWTCFVKRQFMNKSLSGPGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .71 RPM | 39 .02 RPM |
SRP017611_kidney | 6 .60 RPM | 62 .87 RPM |
SRP017611_liver | 3 .64 RPM | 29 .32 RPM |