RetrogeneDB ID: | retro_shar_144 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834465.1:1394021..1394528(+) | ||
Located in intron of: | ENSSHAG00000012191 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPC3 | ||
Ensembl ID: | ENSSHAG00000014805 | ||
Aliases: | None | ||
Description: | actin related protein 2/3 complex, subunit 3, 21kDa [Source:HGNC Symbol;Acc:706] |
Percent Identity: | 74.57 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | HSSLMDPDTKLIGNMALLPIRSQFK-GPAPRETKDTDIVDEAIYYFKA-NVFFKNYEIKNEADRTLIYIT |
.SSLMDPDTKLIGNMALLPI.SQFK.G......KDTD.V..AIYYF....VFFKNYEIKNE.DRTLIYIT | |
Retrocopy | YSSLMDPDTKLIGNMALLPIGSQFK<GELQKKQKDTDTVVKAIYYFQS<PVFFKNYEIKNETDRTLIYIT |
Parental | LYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGL |
LYISE.LKKLQ..NSK..GEK..YTL.IT.FPIPG.P.F.L.AIYAKP.NK.E.E..R.YLQQL.QE.G. | |
Retrocopy | LYISEYLKKLQNYNSKR*GEKLIYTL*ITSFPIPGKPDFSLIAIYAKP*NKLEHEMIRVYLQQLWQENGP |
Parental | RL-CEKVFDPQSDKPSKWWTCFVKRQFMNKSLS |
RL.CEKVFDPQSD..SKWWTCFVK.QFMNK.LS | |
Retrocopy | RL<CEKVFDPQSDRFSKWWTCFVKKQFMNKNLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |