RetrogeneDB ID: | retro_itri_196 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393279.1:48858670..48859021(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000020783 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.95 % |
Parental protein coverage: | 94.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KKDAGKSAKKDKDPVNKSGGKA-KKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERL |
..DA.K..KKD..PV.KSGGKA.K.KK.SKGKVRDKL.NL.LFDKAT.D.LC.EV.NY.LITPAVVSER. | |
Retrocopy | QEDARK*PKKDRKPVSKSGGKA<KHKK*SKGKVRDKLTNLALFDKAT*DELCMEVLNYDLITPAVVSERR |
Parental | KIRGSLARAALQELLSKG-LIKLVSKHRAQVIYTRNTKGGDAPAAGEDA |
KIRGSLARAAL.E...KG.L..L.SK.RAQVIYT.NTKGGDAP..GEDA | |
Retrocopy | KIRGSLARAALEEFPRKG>LTNLISKDRAQVIYTTNTKGGDAPDSGEDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012395 | 3 retrocopies | |
Felis catus | ENSFCAG00000001151 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000017531 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000014185 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000002687 | 8 retrocopies | |
Macaca mulatta | ENSMMUG00000016894 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000016194 | 9 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000020783 | 3 retrocopies |
retro_itri_1491, retro_itri_196 , retro_itri_87,
|
Vicugna pacos | ENSVPAG00000000266 | 4 retrocopies |