Parental gene:

RPS25, ENSLACG00000017531

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126582.1:2175761..2183252(-)


>ENSLACG00000017531
ATGCCTCCCAAGGACGATAAGAAGAAGAAGGATGCTGGGAAAGGCGCAAAAAAAGACAAGGACCCAGTAAACAAGTCGGG
TGGCAAAGCTAAGAAGAAGAAGTGGTCCAAGGGGAAAGTGAGGGACAAGTTGAACAACCTGGTCCTCTTTGACAAGGCCA
CTTACGACAAGCTGTACAAGGAAGTGCCCAACTACAAACTCATCACACCTGCCGTGGTATCAGAGAGGCTGAAGATTAGG
GGATCCCTGGCCAGGGCTGCTCTTCAGGAGCTGCTTAACAAAGGTATGATTAAGTTGGTATCTAAACACAGAGCCCAGGT
TATCTACACGAGAAACACCAAGGGGGGAGATGCACCTGCTATCGATGAGGTGTAG

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 1856 .97 RPM
DRP000627_kidney 1234 .29 RPM
DRP000627_pelvic_fin 1759 .00 RPM
DRP000627_pharynx 695 .42 RPM
DRP000627_gill 1027 .91 RPM
DRP000627_tail_muscle 445 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000051 possible_ortholog 5 retrogenes
retro_amel_1654, retro_amel_1765, retro_amel_574, retro_amel_60, retro_amel_684,
Bos taurus ENSBTAG00000027772 possible_ortholog 2 retrogenes
retro_btau_203, retro_btau_9,
Canis familiaris ENSCAFG00000012395 possible_ortholog 3 retrogenes
retro_cfam_500, retro_cfam_680, retro_cfam_984,
Callithrix jacchus ENSCJAG00000013691 possible_ortholog 1 retrogene
retro_cjac_208,
Cavia porcellus ENSCPOG00000013298 possible_ortholog 2 retrogenes
retro_cpor_705, retro_cpor_9,
Equus caballus ENSECAG00000020978 possible_ortholog 2 retrogenes
retro_ecab_89, retro_ecab_976,
Felis catus ENSFCAG00000001151 possible_ortholog 3 retrogenes
retro_fcat_1792, retro_fcat_601, retro_fcat_903,
Loxodonta africana ENSLAFG00000017117 possible_ortholog 6 retrogenes
retro_lafr_1074, retro_lafr_270, retro_lafr_387, retro_lafr_431, retro_lafr_478, retro_lafr_90,
Macropus eugenii ENSMEUG00000014185 ortholog_one2one 3 retrogenes
retro_meug_1181, retro_meug_1562, retro_meug_174,
Microcebus murinus ENSMICG00000002687 possible_ortholog 8 retrogenes
retro_mmur_1023, retro_mmur_1514, retro_mmur_229, retro_mmur_308, retro_mmur_387, retro_mmur_425, retro_mmur_485, retro_mmur_688,
Myotis lucifugus ENSMLUG00000004752 possible_ortholog 15 retrogenes
retro_mluc_1166, retro_mluc_1482, retro_mluc_1514, retro_mluc_1541, retro_mluc_1665, retro_mluc_1762, retro_mluc_1794, retro_mluc_1947, retro_mluc_2030, retro_mluc_2394, retro_mluc_467, retro_mluc_523, retro_mluc_649, retro_mluc_669, retro_mluc_903,
Macaca mulatta ENSMMUG00000016894 possible_ortholog 2 retrogenes
retro_mmul_137, retro_mmul_71,
Mus musculus ENSMUSG00000009927 possible_ortholog 15 retrogenes
retro_mmus_128, retro_mmus_1368, retro_mmus_1455, retro_mmus_1760, retro_mmus_1769, retro_mmus_1788, retro_mmus_2375, retro_mmus_2393, retro_mmus_2641, retro_mmus_2700, retro_mmus_2797, retro_mmus_3218, retro_mmus_336, retro_mmus_3523, retro_mmus_880,
Oryctolagus cuniculus ENSOCUG00000017256 possible_ortholog 11 retrogenes
retro_ocun_1166, retro_ocun_1231, retro_ocun_1319, retro_ocun_1553, retro_ocun_1761, retro_ocun_291, retro_ocun_298, retro_ocun_548, retro_ocun_623, retro_ocun_856, retro_ocun_978,
Otolemur garnettii ENSOGAG00000007265 possible_ortholog 3 retrogenes
retro_ogar_220, retro_ogar_257, retro_ogar_32,
Ochotona princeps ENSOPRG00000016194 ortholog_one2one 9 retrogenes
retro_opri_1099, retro_opri_1204, retro_opri_256, retro_opri_320, retro_opri_393, retro_opri_493, retro_opri_64, retro_opri_854, retro_opri_873,
Pongo abelii ENSPPYG00000025915 possible_ortholog 6 retrogenes
retro_pabe_1889, retro_pabe_1971, retro_pabe_2930, retro_pabe_3507, retro_pabe_71, retro_pabe_94,
Rattus norvegicus ENSRNOG00000027503 possible_ortholog 5 retrogenes
retro_rnor_1430, retro_rnor_157, retro_rnor_893, retro_rnor_90, retro_rnor_992,
Sorex araneus ENSSARG00000002284 possible_ortholog 4 retrogenes
retro_sara_21, retro_sara_212, retro_sara_43, retro_sara_542,
Ictidomys tridecemlineatus ENSSTOG00000020783 possible_ortholog 3 retrogenes
retro_itri_1491, retro_itri_196, retro_itri_87,
Tupaia belangeri ENSTBEG00000010244 possible_ortholog 16 retrogenes
retro_tbel_1592, retro_tbel_1823, retro_tbel_1849, retro_tbel_22, retro_tbel_2651, retro_tbel_2744, retro_tbel_3106, retro_tbel_3107, retro_tbel_3499, retro_tbel_374, retro_tbel_3871, retro_tbel_3877, retro_tbel_4239, retro_tbel_4434, retro_tbel_444, retro_tbel_4464,
Vicugna pacos ENSVPAG00000000266 ortholog_one2one 4 retrogenes
retro_vpac_106, retro_vpac_118, retro_vpac_337, retro_vpac_546,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_50 66.09 91.94
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2. retro_lcha_72 60.50 94.35
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3. retro_lcha_101 61.06 89.52
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4. retro_lcha_118 57.02 89.52
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Download FASTA sequences of all ENSLACG00000017531 retrocopies