RetrogeneDB ID: | retro_vpac_118 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1910:132239..132552(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS25 | ||
Ensembl ID: | ENSVPAG00000000266 | ||
Aliases: | None | ||
Description: | ribosomal protein S25 [Source:HGNC Symbol;Acc:10413] |
Percent Identity: | 73.58 % |
Parental protein coverage: | 97.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITP |
.P.KDDKKKKD.GK.A.KDKDP.NKSGGKAKKK.W.KGKV.DKLNN..LFDKATYDKLCK.V.NYKLI.. | |
Retrocopy | IPLKDDKKKKDGGKLARKDKDPGNKSGGKAKKKNWAKGKVQDKLNNVGLFDKATYDKLCKDVLNYKLIIL |
Parental | AVVSERLKIRGSLAR-AALQELLSKGLIKLVSKHRA |
AV.S.R......LAR.AALQELLSKGL.KL.S..RA | |
Retrocopy | AVISQRQDL-WFLAR>AALQELLSKGLTKLLSNYRA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |