RetrogeneDB ID:

retro_meug_273

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:GeneScaffold_88:9974..10279(-)
Located in intron of:ENSMEUG00000001466
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FABP3
Ensembl ID:ENSMEUG00000012501
Aliases:None
Description:fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) [Source:HGNC Symbol;Acc:3557]


Retrocopy-Parental alignment summary:






>retro_meug_273
CAGATGGTCAGCATGACCAAGCCCACACCATCATTGAGGGCAGTGGGGATACCATCACTGTCAAGACTCAGAGCACTTTC
AACAACACTGAGACCTCCTTCAAGTCGGGTGTAGAGTTTGATGAGACAACAGCTGATGAGAGGAAGGTCAAGTCTCTTGT
TACCCTGGACAGAGGCAAACTTGTCCATGTCCAGCAGTGGGACGGGCAGGAGACCACACTCATTTGGGAGCTCCAGTATG
GCAAGCTCATTTGGACAGTAACCCACGGCAGCGCAGCCTGCATTAGGAGCTCTGAGAAGGAGGCA

ORF - retro_meug_273 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.64 %
Parental protein coverage: 76.12 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalQVGNMTKPT-TIIQISGDTITLKTQSTFKNTEISFKLGVEFDETTADDRKVKSLVTLDGGKLVHVQKWDG
Q...MTKPT.TII..SGDTIT.KTQSTF.NTE.SFK.GVEFDETTAD.RKVKSLVTLD.GKLVHVQ.WDG
RetrocopyQMVSMTKPT<TIIEGSGDTITVKTQSTFNNTETSFKSGVEFDETTADERKVKSLVTLDRGKLVHVQQWDG
ParentalQETTLVRELQDGKLILTLTHGSAVCVRTYEKEA
QETTL..ELQ.GKLI.T.THGSA.C.R..EKEA
RetrocopyQETTLIWELQYGKLIWTVTHGSAACIRSSEKEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_273 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_273 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000168192 retrocopies
Danio rerio ENSDARG000000232901 retrocopy
Dasypus novemcinctus ENSDNOG000000005112 retrocopies
Equus caballus ENSECAG000000248521 retrocopy
Homo sapiens ENSG000001217691 retrocopy
Gorilla gorilla ENSGGOG000000144321 retrocopy
Macropus eugenii ENSMEUG000000021361 retrocopy
Macropus eugenii ENSMEUG000000031952 retrocopies
Macropus eugenii ENSMEUG00000012501 6 retrocopies
Microcebus murinus ENSMICG000000093594 retrocopies
Myotis lucifugus ENSMLUG000000136092 retrocopies
Mus musculus ENSMUSG000000287733 retrocopies
Nomascus leucogenys ENSNLEG000000015861 retrocopy
Otolemur garnettii ENSOGAG000000137574 retrocopies
Pongo abelii ENSPPYG000000016161 retrocopy
Pan troglodytes ENSPTRG000000004571 retrocopy
Rattus norvegicus ENSRNOG000000128791 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000038423 retrocopies



Copyright © RetrogeneDB 2014-2017