RetrogeneDB ID:

retro_ogar_1148

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873537.1:16935495..16935893(+)
Located in intron of:ENSOGAG00000000320
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FABP3
Ensembl ID:ENSOGAG00000013757
Aliases:None
Description:fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) [Source:HGNC Symbol;Acc:3557]


Retrocopy-Parental alignment summary:






>retro_ogar_1148
ATGGTGGACGCCTTCCTGGGTACCTGGAAGCTAGTGGATAGCAAGAATTTCGATGACTACATGAAGTCAATTGGGGTGGG
TTTTGCTACCAGGCAGGTGGCCAACATGACCAAGCCTACCACAGTCATCGAAAAGAATGGGGACACTATCATATTAAGGA
CACAGCGCACCTTCAAGAACACAGAGATCAGCGTTAAGCTTGGGGTGGAGTTTGATGAGACAACAGCAGATGACAGGAAG
GTCAAGTCCACTGTGACACTGGATCGAGGCAGACTTGTCCACCTGCAGAAGTGGGACGGGCAAGAGACAACCCTTGTGCG
GGAGCTAAGTGGTGGAAAACTTATCCTGACGCTCACCCACGGTAGTGTAGTTGCACTCGCACTTAAGAGAAAGAGGCA

ORF - retro_ogar_1148 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.79 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMVDAFVGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEKNGDTITLRTQSTFKNTEISFKLGVE
MVDAF.GTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTT.IEKNGDTI.LRTQ.TFKNTEIS.KLGVE
RetrocopyMVDAFLGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTVIEKNGDTIILRTQRTFKNTEISVKLGVE
ParentalFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELSDGKLILTLTHGSVV-CTRTYEKEA
FDETTADDRKVKS.VTLD.G.LVHLQKWDGQETTLVRELS.GKLILTLTHGSVV.CTRT.EKEA
RetrocopyFDETTADDRKVKSTVTLDRGRLVHLQKWDGQETTLVRELSGGKLILTLTHGSVV<CTRT*EKEA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1148 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 46 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000168192 retrocopies
Danio rerio ENSDARG000000232901 retrocopy
Dasypus novemcinctus ENSDNOG000000005112 retrocopies
Equus caballus ENSECAG000000248521 retrocopy
Homo sapiens ENSG000001217691 retrocopy
Gorilla gorilla ENSGGOG000000144321 retrocopy
Macropus eugenii ENSMEUG000000125016 retrocopies
Microcebus murinus ENSMICG000000093594 retrocopies
Myotis lucifugus ENSMLUG000000136092 retrocopies
Mus musculus ENSMUSG000000287733 retrocopies
Nomascus leucogenys ENSNLEG000000015861 retrocopy
Otolemur garnettii ENSOGAG0000000241310 retrocopies
Otolemur garnettii ENSOGAG000000121661 retrocopy
Otolemur garnettii ENSOGAG00000013757 4 retrocopies
Otolemur garnettii ENSOGAG000000311101 retrocopy
Pongo abelii ENSPPYG000000016161 retrocopy
Pan troglodytes ENSPTRG000000004571 retrocopy
Rattus norvegicus ENSRNOG000000128791 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000038423 retrocopies



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