RetrogeneDB ID: retro_ggor_990

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 13:24442415..24442811(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000028161
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: FABP3
• Ensembl ID: ENSGGOG00000014432
• Aliases: None
• Description: None

Sequence

>retro_ggor_990
ATGGTAGATGCCTTCCTGTGCACCTGGAAGCTCTCAGACAGCAAGAATTTTGATGACTACATGAAGTTAATCGGTGCAAG
TTTTGCTATCAGGCAGGTGGCTAGCATGACAAAGCCTACCACAATCATCAAAAAGAATGGGGACATTATCACCTTAAAAA
CACATAGCGTGTTCAAGAACGCAGAGATCAGCTTTAAGCTGGGGATGGGGTTCGATGAGACAACAGCAGATGACAAAAAG
GTCAAGTCCATTGTGACACTGGATGGAGGCAAACCTGTTCACCTGCAGAAGTGTAACGGGCAAGAGAGGACACTTGTGCC
AGAGCTAAGTGATGGGAAACTCATCCTGACACTCACCCAGGGCACTGCGGTTTACACTCGCACTTACGAGAAAGAG

Alignment

ORF - retro_ggor_990 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.33 %
• Parental protein coverage: 99.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVE
          MVDAFL.TWKL.DSKNFDDYMK..G..FA.RQVASMTKPTTII.KNGDI.TLKTHS.FKN.EISFKLG..
Retrocopy MVDAFLCTWKLSDSKNFDDYMKLIGASFAIRQVASMTKPTTIIKKNGDIITLKTHSVFKNAEISFKLGMG

Parental  FDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKE
          FDETTADD.KVKSIVTLDGGK.VHLQK..GQE.TLV.EL.DGKLILTLT.GTAV.TRTYEKE
Retrocopy FDETTADDKKVKSIVTLDGGKPVHLQKCNGQERTLVPELSDGKLILTLTQGTAVYTRTYEKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	99.79 RPM
SRP007412_cerebellum	0.00 RPM	25.88 RPM
SRP007412_heart	0.00 RPM	750.85 RPM
SRP007412_kidney	0.00 RPM	266.35 RPM
SRP007412_liver	0.00 RPM	0.63 RPM
SRP007412_testis	0.00 RPM	72.11 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_990 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_990 has 4 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_1258
Pan troglodytes	retro_ptro_3047
Pongo abelii	retro_pabe_1048
Macaca mulatta	retro_mmul_1311

---

Parental genes homology:

Parental genes homology involve 19 parental genes, and 44 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000016819	2 retrocopies	retro_btau_1467, retro_btau_295,
Danio rerio	ENSDARG00000023290	1 retrocopy	retro_drer_33,
Dasypus novemcinctus	ENSDNOG00000000511	2 retrocopies	retro_dnov_1510, retro_dnov_2482,
Equus caballus	ENSECAG00000024852	1 retrocopy	retro_ecab_519,
Homo sapiens	ENSG00000121769	1 retrocopy	retro_hsap_1258,
Gorilla gorilla	ENSGGOG00000005964	8 retrocopies	retro_ggor_1005, retro_ggor_1163, retro_ggor_2079, retro_ggor_2276, retro_ggor_2284, retro_ggor_2563, retro_ggor_2931, retro_ggor_940,
Gorilla gorilla	ENSGGOG00000014432	1 retrocopy	retro_ggor_990 ,
Gorilla gorilla	ENSGGOG00000016835	1 retrocopy	retro_ggor_2488,
Gorilla gorilla	ENSGGOG00000025475	1 retrocopy	retro_ggor_489,
Macropus eugenii	ENSMEUG00000012501	6 retrocopies	retro_meug_1037, retro_meug_148, retro_meug_1660, retro_meug_273, retro_meug_563, retro_meug_819,
Microcebus murinus	ENSMICG00000009359	4 retrocopies	retro_mmur_1490, retro_mmur_203, retro_mmur_621, retro_mmur_734,
Myotis lucifugus	ENSMLUG00000013609	2 retrocopies	retro_mluc_1144, retro_mluc_1717,
Mus musculus	ENSMUSG00000028773	3 retrocopies	retro_mmus_2804, retro_mmus_3204, retro_mmus_65,
Nomascus leucogenys	ENSNLEG00000001586	1 retrocopy	retro_nleu_2097,
Otolemur garnettii	ENSOGAG00000013757	4 retrocopies	retro_ogar_1148, retro_ogar_1312, retro_ogar_1873, retro_ogar_959,
Pongo abelii	ENSPPYG00000001616	1 retrocopy	retro_pabe_1048,
Pan troglodytes	ENSPTRG00000000457	1 retrocopy	retro_ptro_3047,
Rattus norvegicus	ENSRNOG00000012879	1 retrocopy	retro_rnor_2199,
Ictidomys tridecemlineatus	ENSSTOG00000003842	3 retrocopies	retro_itri_1544, retro_itri_640, retro_itri_641,