RetrogeneDB ID: | retro_btau_295 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:54668354..54668750(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP3 | ||
Ensembl ID: | ENSBTAG00000016819 | ||
Aliases: | FABP3, FABP, FABP-3, H-FABP | ||
Description: | Fatty acid-binding protein, heart [Source:UniProtKB/Swiss-Prot;Acc:P10790] |
Percent Identity: | 64.71 % |
Parental protein coverage: | 99.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MVDAFVGTWKLVDSKNFDDYMKSLGVGFATRQVGNMT-KPTT-IIEVNGDTVIIKTQSTFKNTEISFKLG |
.VD.F.G.WKL.D.KNF.DY.KSL.V.FATRQV..MT..PTT.I.EVNGDT..IKTQS.FKNTEI.FKLG | |
Retrocopy | LVDTFMGIWKLLDGKNFNDYLKSLSVDFATRQVATMT<QPTT<ITEVNGDTITIKTQSIFKNTEICFKLG |
Parental | VEFDE-TTADDRKVKSIV-TLDGGKLVHVQKWNGQETSLVREMVDGKLILTLTHGTAVCTRTYEKQ |
.EF.E.T..D..........LDGGKLVHVQKWNGQE..LV.E..DG..ILT.T.G.AVCT.TY.K. | |
Retrocopy | MEFGETTADDRKVKSTVT<VLDGGKLVHVQKWNGQEKTLVQETGDGMPILTPTQGGAVCTHTYKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .79 RPM |
ERP005899_muscle | 0 .00 RPM | 36 .42 RPM |
SRP017611_brain | 0 .00 RPM | 21 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 80 .31 RPM |
SRP017611_liver | 0 .00 RPM | 0 .60 RPM |
SRP030211_testis | 0 .00 RPM | 9 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016819 | 2 retrocopies |
retro_btau_1467, retro_btau_295 ,
|
Bos taurus | ENSBTAG00000020028 | 1 retrocopy | |
Bos taurus | ENSBTAG00000047330 | 3 retrocopies | |
Danio rerio | ENSDARG00000023290 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000511 | 2 retrocopies | |
Equus caballus | ENSECAG00000024852 | 1 retrocopy | |
Homo sapiens | ENSG00000121769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014432 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012501 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000009359 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000013609 | 2 retrocopies | |
Mus musculus | ENSMUSG00000028773 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001586 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013757 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000001616 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000457 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012879 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003842 | 3 retrocopies |