RetrogeneDB ID:

retro_mmur_1490

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_684:94151..94501(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FABP3
Ensembl ID:ENSMICG00000009359
Aliases:None
Description:fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) [Source:HGNC Symbol;Acc:3557]


Retrocopy-Parental alignment summary:






>retro_mmur_1490
GTGGTGGACGCCTTCCCGGGCACCTGGAAACTAGCAGACAGCAAGAATTTCGATGACTGCATGAAGTCAATCAGGTGGGT
CTTGCTACAAGGCAGGTGGCCAACATGACCGAGCCTACCACAATCATGGAAAAGAGTGGGGACACCAGCATCCTAAAGAC
ACAGAGAACCTTTAAGAACACAGAGATCAGCTGTAAACCAGGGGTGGAGTTTGATGAGACAGCAGCAGATGACAGGAAGG
CCAAGTCCACTGTGACACTGGATGGAGGCAAACTTGCTCACCTGCAGAAGTGGGACAGGCAGGAGACGACACTTGTGCAA
GAACTAAGTGATGGGAACCTTATCCTGACA

ORF - retro_mmur_1490 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.36 %
Parental protein coverage: 87.97 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMVDAFLGTWKLVDSKNFDDYMKSIG-VGFATRQVANMTKPTTIIEKNGDTIILKTQSTFKNTEISFKLGV
.VDAF.GTWKL.DSKNFDD.MKSI..VG.ATRQVANMT.PTTI.EK.GDT.ILKTQ.TFKNTEIS.K.GV
RetrocopyVVDAFPGTWKLADSKNFDDCMKSIR<VGLATRQVANMTEPTTIMEKSGDTSILKTQRTFKNTEISCKPGV
ParentalEFDETTADDRKVKSTVTLDGGKLVHVQKWNGQETTLVRELSDGKLILT
EFDET.ADDRK.KSTVTLDGGKL.H.QKW..QETTLV.ELSDG.LILT
RetrocopyEFDETAADDRKAKSTVTLDGGKLAHLQKWDRQETTLVQELSDGNLILT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1490 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1490 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000168192 retrocopies
Danio rerio ENSDARG000000232901 retrocopy
Dasypus novemcinctus ENSDNOG000000005112 retrocopies
Equus caballus ENSECAG000000248521 retrocopy
Homo sapiens ENSG000001217691 retrocopy
Gorilla gorilla ENSGGOG000000144321 retrocopy
Macropus eugenii ENSMEUG000000125016 retrocopies
Microcebus murinus ENSMICG000000013112 retrocopies
Microcebus murinus ENSMICG000000053191 retrocopy
Microcebus murinus ENSMICG00000009359 4 retrocopies
Myotis lucifugus ENSMLUG000000136092 retrocopies
Mus musculus ENSMUSG000000287733 retrocopies
Nomascus leucogenys ENSNLEG000000015861 retrocopy
Otolemur garnettii ENSOGAG000000137574 retrocopies
Pongo abelii ENSPPYG000000016161 retrocopy
Pan troglodytes ENSPTRG000000004571 retrocopy
Rattus norvegicus ENSRNOG000000128791 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000038423 retrocopies



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