RetrogeneDB ID: | retro_hsap_1258 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:42943397..42943793(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233259 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FABP3 | ||
Ensembl ID: | ENSG00000121769 | ||
Aliases: | None | ||
Description: | fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) [Source:HGNC Symbol;Acc:3557] |
Percent Identity: | 82.58 % |
Parental protein coverage: | 99.25 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVE |
MVDAFL.TWKL.DSKNFDDYMK..G..FA.RQVASMTKPTTII.KNGDI.TLKT.S.FKNTEISFKLG.. | |
Retrocopy | MVDAFLCTWKLSDSKNFDDYMKLIGASFAIRQVASMTKPTTIIKKNGDIITLKTQSMFKNTEISFKLGMG |
Parental | FDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKE |
FDETTADD.KVKSIVTLDG.KL.HLQK..GQE.TLV.EL.DGKLILTLT.GTAV.TRTYEKE | |
Retrocopy | FDETTADDKKVKSIVTLDGSKLFHLQKCNGQERTLVPELSDGKLILTLTQGTAVYTRTYEKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 6 .30 RPM |
bodymap2_adrenal | 0 .00 RPM | 18 .01 RPM |
bodymap2_brain | 0 .00 RPM | 30 .26 RPM |
bodymap2_breast | 0 .00 RPM | 15 .02 RPM |
bodymap2_colon | 0 .00 RPM | 6 .05 RPM |
bodymap2_heart | 0 .00 RPM | 1157 .55 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .18 RPM |
bodymap2_liver | 0 .00 RPM | 1 .29 RPM |
bodymap2_lung | 0 .00 RPM | 7 .49 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .36 RPM |
bodymap2_ovary | 0 .00 RPM | 11 .57 RPM |
bodymap2_prostate | 0 .00 RPM | 14 .51 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 185 .32 RPM |
bodymap2_testis | 0 .00 RPM | 21 .25 RPM |
bodymap2_thyroid | 0 .00 RPM | 105 .70 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .77 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3047 |
Gorilla gorilla | retro_ggor_990 |
Pongo abelii | retro_pabe_1048 |
Macaca mulatta | retro_mmul_1311 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016819 | 2 retrocopies | |
Danio rerio | ENSDARG00000023290 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000000511 | 2 retrocopies | |
Equus caballus | ENSECAG00000024852 | 1 retrocopy | |
Homo sapiens | ENSG00000121769 | 1 retrocopy |
retro_hsap_1258 ,
|
Homo sapiens | ENSG00000164434 | 1 retrocopy | |
Homo sapiens | ENSG00000164687 | 12 retrocopies | |
Homo sapiens | ENSG00000197416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014432 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012501 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000009359 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000013609 | 2 retrocopies | |
Mus musculus | ENSMUSG00000028773 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001586 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013757 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000001616 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000457 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012879 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003842 | 3 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |