RetrogeneDB ID: | retro_mmus_2113 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:156347204..156347840(-) | ||
Located in intron of: | ENSMUSG00000038085 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082321 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pdcd10 | ||
Ensembl ID: | ENSMUSG00000027835 | ||
Aliases: | Pdcd10, 2410003B13Rik, Ccm3, Tfa15, Tfar15 | ||
Description: | programmed cell death 10 [Source:MGI Symbol;Acc:MGI:1928396] |
Percent Identity: | 99.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKK |
MRMTMEEMKNEAE.TSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKK | |
Retrocopy | MRMTMEEMKNEAEITSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKK |
Parental | SVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKE |
SVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKE | |
Retrocopy | SVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKE |
Parental | LLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKT |
LLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKT | |
Retrocopy | LLDTVNNVFKKYQYQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQTNLILQTFKT |
Parental | VA |
VA | |
Retrocopy | VA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .23 RPM | 13 .11 RPM |
SRP007412_cerebellum | 0 .04 RPM | 8 .73 RPM |
SRP007412_heart | 0 .06 RPM | 4 .42 RPM |
SRP007412_kidney | 0 .15 RPM | 9 .97 RPM |
SRP007412_liver | 0 .03 RPM | 7 .24 RPM |
SRP007412_testis | 0 .00 RPM | 10 .79 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_82192 | 433 libraries | 511 libraries | 123 libraries | 4 libraries | 1 library |
TSS #2 | TSS_82193 | 524 libraries | 499 libraries | 47 libraries | 1 library | 1 library |