RetrogeneDB ID: | retro_pabe_3257 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:52430950..52431393(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD10 | ||
Ensembl ID: | ENSPPYG00000029750 | ||
Aliases: | None | ||
Description: | programmed cell death 10 [Source:HGNC Symbol;Acc:8761] |
Percent Identity: | 66.45 % |
Parental protein coverage: | 81.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | VNLSAAQTLRAAFIKAEKE-NPGLTQDIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLN |
VNLSAAQ.LR.AFIKA.KE.NPGLTQ......LE........T..LL.MAA..V....IE..EPEFQD.N | |
Retrocopy | VNLSAAQILRVAFIKANKE<NPGLTQYVVLATLEXXXRNIKITGFLL-MAAVNV***IIE*LEPEFQDAN |
Parental | E-KARALKQILSKIP-DEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNR-RALEHQKKEFVKYS |
E.KA..L.QILSK.P..E.ND.VR.LQTIKDI.SAIKEL.D.VNNVFKKYQYQN..RA.EHQKK.F.KYS | |
Retrocopy | E<KAQVLIQILSKFP<SELNDSVRILQTIKDIKSAIKEL-DIVNNVFKKYQYQNH<RAPEHQKKVFLKYS |
Parental | KSFSDTLKTYFKDGK |
KSF...LKTYFKD.K | |
Retrocopy | KSFNGILKTYFKDDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .57 RPM |
SRP007412_heart | 0 .00 RPM | 4 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .01 RPM |
SRP007412_liver | 0 .00 RPM | 6 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3953 |
Pan troglodytes | retro_ptro_2683 |
Gorilla gorilla | retro_ggor_2656 |
Macaca mulatta | retro_mmul_2288 |