Parental gene:

PDCD10, ENSCJAG00000002763

Aliases:None
Description:programmed cell death 10 [Source:HGNC Symbol;Acc:8761]
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:11185859..11236268(+)


>ENSCJAG00000002763
ATGAGGATGACAATGGAAGAGATGAAGAATGAAGCTGAGACCACATCCATGGTTTCTATGCCTCTCTATGCAGTCATGTA
TCCTGTGTTTAATGAGCTAGAACGAGTAAATCTATCTGCAGCTCAGACACTGAGAGCCGCTTTCATTAAGGCTGAAAAAG
AAAATCCAGGTCTGACACAAGACATCATTATGAAAATTTTAGAGAAAAAAAGTGTAGAAGTTAACTTCACAGAATCCCTT
CTTCGTATGGCAGCTGATGATGTAGAAGAGTATATGATTGAACGACCAGAGCCAGAATTCCAAGACCTAAACGAAAAGGC
ACGAGCACTTAAACAAATTCTCAGTAAGATCCCAGATGAGATCAACGACAGAGTGAGGTTTCTGCAGACAATCAAGGATA
TAGCTAGTGCAATAAAAGAACTTCTTGATACAGTGAATAATGTCTTCAAGAAATATCAGTACCAGAACCGCAGGGCACTT
GAACACCAAAAGAAAGAATTTGTAAAGTACTCCAAAAGTTTCAGTGATACTCTGAAAACATATTTTAAAGATGGCAAGGC
AATAAATGTGTTCATAAGTGCCAACCGACTAATACATCAAACCAACTTAATACTTCAGACCTTCAAAACTGTGGCCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 25 .06 RPM
SRP051959_skeletal_muscle 11 .20 RPM
SRP051959_lymph_node 25 .34 RPM
SRP051959_lung 22 .56 RPM
SRP051959_liver 15 .73 RPM
SRP051959_kidney 23 .65 RPM
SRP051959_heart 13 .96 RPM
SRP051959_colon 28 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002181 ortholog_one2one 1 retrogene
retro_amel_420,
Bos taurus ENSBTAG00000031709 ortholog_one2one 2 retrogenes
retro_btau_1623, retro_btau_713,
Canis familiaris ENSCAFG00000014569 ortholog_one2one 2 retrogenes
retro_cfam_1988, retro_cfam_687,
Dasypus novemcinctus ENSDNOG00000015854 ortholog_one2one 1 retrogene
retro_dnov_351,
Homo sapiens ENSG00000114209 ortholog_one2one 1 retrogene
retro_hsap_3953,
Gorilla gorilla ENSGGOG00000008621 ortholog_one2one 1 retrogene
retro_ggor_2656,
Loxodonta africana ENSLAFG00000006823 ortholog_one2one 1 retrogene
retro_lafr_409,
Microcebus murinus ENSMICG00000007004 ortholog_one2one 1 retrogene
retro_mmur_1008,
Myotis lucifugus ENSMLUG00000016978 ortholog_one2one 1 retrogene
retro_mluc_1331,
Macaca mulatta ENSMMUG00000005938 ortholog_one2one 2 retrogenes
retro_mmul_1090, retro_mmul_2288,
Mustela putorius furo ENSMPUG00000017075 ortholog_one2one 1 retrogene
retro_mputfur_298,
Mus musculus ENSMUSG00000027835 ortholog_one2one 1 retrogene
retro_mmus_2113,
Nomascus leucogenys ENSNLEG00000004874 ortholog_one2one 1 retrogene
retro_nleu_532,
Otolemur garnettii ENSOGAG00000013887 ortholog_one2one 1 retrogene
retro_ogar_540,
Oreochromis niloticus ENSONIG00000005553 ortholog_one2many 1 retrogene
retro_onil_40,
Procavia capensis ENSPCAG00000010385 ortholog_one2one 1 retrogene
retro_pcap_283,
Pongo abelii ENSPPYG00000029750 ortholog_one2one 1 retrogene
retro_pabe_3257,
Pan troglodytes ENSPTRG00000015598 ortholog_one2one 1 retrogene
retro_ptro_2683,
Sarcophilus harrisii ENSSHAG00000005443 ortholog_one2one 1 retrogene
retro_shar_414,
Ictidomys tridecemlineatus ENSSTOG00000028442 ortholog_one2many 3 retrogenes
retro_itri_1208, retro_itri_1377, retro_itri_322,
Tupaia belangeri ENSTBEG00000000240 ortholog_one2one 9 retrogenes
retro_tbel_1498, retro_tbel_1690, retro_tbel_2223, retro_tbel_2903, retro_tbel_3430, retro_tbel_3898, retro_tbel_3900, retro_tbel_4532, retro_tbel_95,
Tarsius syrichta ENSTSYG00000000708 ortholog_one2one 1 retrogene
retro_tsyr_1786,
Tursiops truncatus ENSTTRG00000016315 ortholog_one2one 1 retrogene
retro_ttru_635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1442 58.89 83.96
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2. retro_cjac_4178 77.36 100.00
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Download FASTA sequences of all ENSCJAG00000002763 retrocopies