RetrogeneDB ID: | retro_tbel_95 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_111:371083..371450(-) | ||
Located in intron of: | ENSTBEG00000007012 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD10 | ||
Ensembl ID: | ENSTBEG00000000240 | ||
Aliases: | None | ||
Description: | programmed cell death 10 [Source:HGNC Symbol;Acc:8761] |
Percent Identity: | 89.43 % |
Parental protein coverage: | 67.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRAL |
YMIERPEPEFQ.LNEKA.ALKQILSKIPDEINDRVRFLQTIKDIA.AI.ELLD.VNNVFKKYQYQN.RAL | |
Retrocopy | YMIERPEPEFQYLNEKA*ALKQILSKIPDEINDRVRFLQTIKDIARAI*ELLDAVNNVFKKYQYQNHRAL |
Parental | EHQKKEFVKYSKSFSDTLKTYFKDGKAINVFVSA-NRLIHQTNLILQTFKTVA |
.HQKKE.VKYSK.FSDTLKTYFKDGK.INVFVSA.N.LIHQTNLILQ.FKTVA | |
Retrocopy | AHQKKECVKYSKNFSDTLKTYFKDGKEINVFVSA>NLLIHQTNLILQAFKTVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |