RetrogeneDB ID:

retro_nleu_1627

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397301.1:12846604..12847177(-)
Located in intron of:ENSNLEG00000004843
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PRDX1
Ensembl ID:ENSNLEG00000014524
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1627
GCGAAGATTTCCAAGCCAGCGCCCTACTGGGAAGGAACAGCTGTGATCGATGGAGAATTTAAGGAGCTGAAGTTAACTGA
TTATCGTGGGAAATACTTGGTTTTTTTCTTCTACCCACTTGATTTCACATTTGTGTGTCCAACTGAAATTATCGCTTTTG
GCGATAGACTTGAAGAATTCAGATCTATAAATACTGAAGTGGTAGCATGCTCTGTTGATTCCCAGTTTACCCATTTGGCC
TGGATTAATACCCCTCGAAGACAAGGAGGACTTGGGCCAATAAGGATTCCACTTCTTTCAGATTTGACCCATCAGATCTC
AAAGGACTATGGTGTATACCTAGAGGACTCAGGCCACACTCTTAGAGGTCTCTTCATTATTGATGACAAAGGAATCCTAA
GACAAATTACTCTGAATGATCTTCCTGTGGGTAGATCAGTGGATGAGACACTACGTTTGGTTCAAGCATTCCAGTACACT
GACAAACATGGAGAAGTCTGTCCTGCTGGCTGGAAACCTGGTAGTGAAACAATAATCCCAGATCCAGCTGGAAAGCTGAA
GTATTTCGATAAA

ORF - retro_nleu_1627 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.31 %
Parental protein coverage: 96.48 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAKIGHSAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIG
AKI...AP....TAV..DG.FK...L.DY.GKY.VFFFYPLDFTFVCPTEIIAF.DR.EEF...N..V..
RetrocopyAKISKPAPYWEGTAVI-DGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVA
ParentalASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVN
.SVDS.F.HLAWINTP..QGGLGP..IPL.SD....I..DYGV...D.G...RGLFIIDDKGILRQIT.N
RetrocopyCSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLN
ParentalDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPGSDTIKPDVQKSKEYFSK
DLPVGRSVDETLRLVQAFQ.TDKHGEVCPAGWKPGS.TI.PD......YF.K
RetrocopyDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFDK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1627 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 32 parental genes, and 89 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136322 retrocopies
Bos taurus ENSBTAG000000036422 retrocopies
Canis familiaris ENSCAFG000000045675 retrocopies
Choloepus hoffmanni ENSCHOG000000033585 retrocopies
Ciona intestinalis ENSCING000000030021 retrocopy
Callithrix jacchus ENSCJAG000000048072 retrocopies
Cavia porcellus ENSCPOG000000141373 retrocopies
Dasypus novemcinctus ENSDNOG000000184881 retrocopy
Dipodomys ordii ENSDORG000000089751 retrocopy
Equus caballus ENSECAG000000086781 retrocopy
Echinops telfairi ENSETEG0000000792211 retrocopies
Felis catus ENSFCAG000000284841 retrocopy
Homo sapiens ENSG000001174501 retrocopy
Macropus eugenii ENSMEUG000000068204 retrocopies
Macaca mulatta ENSMMUG000000062211 retrocopy
Monodelphis domestica ENSMODG000000023822 retrocopies
Mus musculus ENSMUSG000000286915 retrocopies
Nomascus leucogenys ENSNLEG000000128002 retrocopies
Nomascus leucogenys ENSNLEG00000014524 2 retrocopies
retro_nleu_1040, retro_nleu_1627 ,
Nomascus leucogenys ENSNLEG000000166983 retrocopies
Oryctolagus cuniculus ENSOCUG000000059512 retrocopies
Otolemur garnettii ENSOGAG000000023034 retrocopies
Pongo abelii ENSPPYG000000014111 retrocopy
Pan troglodytes ENSPTRG000000006751 retrocopy
Pteropus vampyrus ENSPVAG000000150011 retrocopy
Rattus norvegicus ENSRNOG000000171948 retrocopies
Sorex araneus ENSSARG000000047035 retrocopies
Sus scrofa ENSSSCG000000039141 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000234132 retrocopies
Tupaia belangeri ENSTBEG000000159974 retrocopies
Tarsius syrichta ENSTSYG000000110311 retrocopy
Tursiops truncatus ENSTTRG000000088584 retrocopies



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