RetrogeneDB ID: | retro_ocun_1123 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:148674401..148674784(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000025604 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CLSEDKKNIVLEEGKEILVGDVGQTVEDPYATFVQMLPDKDCRYALYDATYETKESKKEDLVFIFWAPEC |
CLSEDKKNIVLEEGKEILVGDVGQTVEDPYATFVQMLPDKDCRYALYDATYETKESKKEDLVFIF.AP.C | |
Retrocopy | CLSEDKKNIVLEEGKEILVGDVGQTVEDPYATFVQMLPDKDCRYALYDATYETKESKKEDLVFIF*APKC |
Parental | APLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKL-GGSAVISLEGKPL |
.PLKSKMIY.SSKDAIKKKLTGIK.ELQANCYEEVKDRCTLAEKL.GGSA.ISLEGKPL | |
Retrocopy | VPLKSKMIYPSSKDAIKKKLTGIKYELQANCYEEVKDRCTLAEKL<GGSAGISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 101 .22 RPM | 268 .33 RPM |
SRP017611_kidney | 40 .54 RPM | 109 .57 RPM |
SRP017611_liver | 17 .88 RPM | 51 .33 RPM |