RetrogeneDB ID: | retro_ocun_243 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:106545910..106546534(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000006972 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E1 | ||
Ensembl ID: | ENSOCUG00000006026 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 1 [Source:HGNC Symbol;Acc:12477] |
Percent Identity: | 78.65 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGP |
SD.D.R............Q...K...T..KK..K.S.SK....LSTSAKRIQKELA.ITLDPPPNCSAGP | |
Retrocopy | SDADQR---DPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKLSTSAKRIQKELAEITLDPPPNCSAGP |
Parental | KGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP |
KGDNIYEW.STILGPPGSVYEGGVF.LDI.F...YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP | |
Retrocopy | KGDNIYEWSSTILGPPGSVYEGGVFCLDIPFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSP |
Parental | ALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT |
ALTISKVLLSICSLLTDCNP.DPLVGSI.TQY.TNRAEHDR.ARQWTKRYAT | |
Retrocopy | ALTISKVLLSICSLLTDCNPTDPLVGSIVTQYLTNRAEHDRIARQWTKRYAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 13 .63 RPM | 33 .61 RPM |
SRP017611_kidney | 9 .43 RPM | 17 .03 RPM |
SRP017611_liver | 2 .54 RPM | 2 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003515 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002251 | 2 retrocopies | |
Felis catus | ENSFCAG00000024719 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014517 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021774 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002610 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006026 | 2 retrocopies |
retro_ocun_134, retro_ocun_243 ,
|
Oryctolagus cuniculus | ENSOCUG00000008900 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000029448 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000008794 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000001416 | 1 retrocopy |