RetrogeneDB ID: | retro_ocun_988 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 18:37482366..37482747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSOCUG00000029448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 78.29 % |
Parental protein coverage: | 87.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI |
AQCSAGPVGDD.F.WQA..MGPNDS.Y..GVFFLT.HFP.DYPFK.PKVAF..RIYHP.INSNGSIC.DI | |
Retrocopy | AQCSAGPVGDDLFPWQAN-MGPNDSLYHIGVFFLTFHFPLDYPFKLPKVAFIARIYHPDINSNGSICPDI |
Parental | LRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM |
L..QWSPA.TISKVLLSICSLLCDPN..DPLVPEIA.IYKT....YN..ARE.TQKY.M | |
Retrocopy | LCAQWSPAITISKVLLSICSLLCDPNQCDPLVPEIAWIYKTEK-NYNTTARE*TQKYTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 45 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .66 RPM |
SRP017611_liver | 0 .00 RPM | 10 .33 RPM |