RetrogeneDB ID: | retro_ocun_261 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL019158:40368..40770(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000015282 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSOCUG00000029448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 88.81 % |
Parental protein coverage: | 91.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT |
MALKRI.KEL.DL.RDPPA.CSAGPVGDD.FHWQATIMGP.DS.YQGGVFFLT.HFPTDYPFKPPK.AFT | |
Retrocopy | MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT |
Parental | TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY |
T.IYHPNINSNGSICLDILRSQWSPALT.SKVLLSICSLLCDPNPDDPLVP.IA.IYK.D.EKY | |
Retrocopy | TKIYHPNINSNGSICLDILRSQWSPALTLSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .43 RPM | 45 .75 RPM |
SRP017611_kidney | 0 .81 RPM | 26 .66 RPM |
SRP017611_liver | 0 .23 RPM | 10 .33 RPM |