RetrogeneDB ID:

retro_ogar_2811

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873666.1:1005118..1005495(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027528
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:NUTF2
Ensembl ID:ENSOGAG00000015568
Aliases:None
Description:nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722]


Retrocopy-Parental alignment summary:






>retro_ogar_2811
ATGGGAGACAAGCCAATCTGGGAGCAGACTGGATCCAGATTTATTCAACATTATTACCAGTTATTCGATAATGATAGAAC
CCAACTAGGCGCAATTTACACTGATGCATCATGCCTTACGTGGGAAGGACAGCAATTCCAGGGTAAAGCTGCCATTGAGA
AGTTGTCTAGCTTTCCGTTCCAGAAAATCCAGCACAGCATCCCGGCACAGGACCATCAGCCTACACCAGATAGTTGCATC
ATCAGCATGTTTGTGGGGCAGCTTAAGGTCGATGAAGATCCCATCATGGGTTTCCACCAGATGTTCCTATTAAGAACATC
AGTGTTGCTTGGGTTTGCACCCATGGCATGTTCAGGCTCGCCCTGCACAACTTCGGC

ORF - retro_ogar_2811 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.84 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITA
MGDKPIWEQ.GS.FIQHYYQLFDNDRTQLGAIY.DASCLTWEGQQFQGKAAI.EKLSS.PFQKIQHSI.A
RetrocopyMGDKPIWEQTGSRFIQHYYQLFDNDRTQLGAIYTDASCLTWEGQQFQGKAAI-EKLSSFPFQKIQHSIPA
ParentalQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLL-KNINDAWVCTNDMFRLALHNFG
QDHQPTPDSCIISM.VGQLK.DEDPIMGFHQMFLL.KNI..AWVCT..MFRLALHNFG
RetrocopyQDHQPTPDSCIISMFVGQLKVDEDPIMGFHQMFLL<KNISVAWVCTHGMFRLALHNFG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2811 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000175485 retrocopies
Bos taurus ENSBTAG000000064142 retrocopies
Cavia porcellus ENSCPOG000000035211 retrocopy
Erinaceus europaeus ENSEEUG000000034702 retrocopies
Gorilla gorilla ENSGGOG000000239255 retrocopies
Macropus eugenii ENSMEUG0000000987411 retrocopies
Myotis lucifugus ENSMLUG000000251753 retrocopies
Macaca mulatta ENSMMUG000000120386 retrocopies
Monodelphis domestica ENSMODG000000055176 retrocopies
Mus musculus ENSMUSG000000084501 retrocopy
Oryctolagus cuniculus ENSOCUG000000063221 retrocopy
Otolemur garnettii ENSOGAG00000015568 2 retrocopies
retro_ogar_2713, retro_ogar_2811 ,
Rattus norvegicus ENSRNOG000000189454 retrocopies
Sarcophilus harrisii ENSSHAG000000061001 retrocopy
Sus scrofa ENSSSCG000000302953 retrocopies
Tupaia belangeri ENSTBEG000000110161 retrocopy
Tursiops truncatus ENSTTRG000000092512 retrocopies
Drosophila melanogaster FBgn00311451 retrocopy



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