RetrogeneDB ID: | retro_rnor_545 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:258218182..258218557(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Nutf2 | ||
Ensembl ID: | ENSRNOG00000018945 | ||
Aliases: | Nutf2, NTF2 | ||
Description: | Nuclear transport factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P61972] |
Percent Identity: | 80.16 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITA |
MGDKPIWEQ.GSSFIQHYYQLFDN.RTQL..IYID..CLTWEGQ.FQG.AA.VEKLSSLPF.KIQHSI.A | |
Retrocopy | MGDKPIWEQLGSSFIQHYYQLFDNNRTQLCVIYIDSPCLTWEGQLFQGEAATVEKLSSLPFHKIQHSIMA |
Parental | QDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNF |
QDHQP.PDSCI.SMVVGQ.KADEDPI.GFH.....K.IN.AWV.TN..FRLALHNF | |
Retrocopy | QDHQPSPDSCIFSMVVGQPKADEDPITGFHWK-QTKIINEAWVPTNNTFRLALHNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .74 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .45 RPM |
SRP017611_liver | 0 .00 RPM | 16 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017548 | 5 retrocopies | |
Bos taurus | ENSBTAG00000006414 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000003521 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003470 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023925 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000009874 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000025175 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000012038 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000005517 | 6 retrocopies | |
Mus musculus | ENSMUSG00000008450 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006322 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015568 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018945 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006100 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030295 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000011016 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009251 | 2 retrocopies | |
Drosophila melanogaster | FBgn0031145 | 1 retrocopy |